PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 287aa MW: 33067 Da PI: 6.948

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10032304m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.8	1.3e-54	9	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+v+yL+++++++++++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g+r+nrat sgyWkatg+dk+++ Ciclev10032304m 9 LPPGFRFHPTDEELIVHYLRNQATSRPCPV-SIIPEVDIYKFDPWQLPEKAEFGEKEWYFFSPRDRKYPNGTRPNRATVSGYWKATGTDKAIYG 101 79**************************.89***********99999************************************* PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ g+kk Lvfykgr pkg ktdW+mheyrl Ciclev10032304m 102 -GSKYLGVKKALVFYKGRPPKGIKTDWIMHEYRL 134 .999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.72E-67	4	161	IPR003441	NAC domain
PROSITE profile	PS51005	61.673	9	161	IPR003441	NAC domain
Pfam	PF02365	6.2E-27	10	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009825	Biological Process	multidimensional cell growth
GO:0009835	Biological Process	fruit ripening
GO:0009908	Biological Process	flower development
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEAQASTELP PGFRFHPTDE ELIVHYLRNQ ATSRPCPVSI IPEVDIYKFD PWQLPEKAEF 60 GEKEWYFFSP RDRKYPNGTR PNRATVSGYW KATGTDKAIY GGSKYLGVKK ALVFYKGRPP 120 KGIKTDWIMH EYRLNDPTRQ PYKHNGSMKL DDWVLCRIYK KRQTGSRSVL DAKVEEDQSC 180 VDQLGKTGGY VEHANASDEQ KLMVKFPRTC SLAHLVELEY FAPISQLLND NTYNFNYDFQ 240 NGINNNAASD DQFENKLQPS DMHQVNHSDS LNQQSLFVNP TVYEFQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-73	9	167	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-73	9	167	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-73	9	167	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-73	9	167	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	9e-74	9	167	20	174	NAC domain-containing protein 19
3swm_B	9e-74	9	167	20	174	NAC domain-containing protein 19
3swm_C	9e-74	9	167	20	174	NAC domain-containing protein 19
3swm_D	9e-74	9	167	20	174	NAC domain-containing protein 19
3swp_A	9e-74	9	167	20	174	NAC domain-containing protein 19
3swp_B	9e-74	9	167	20	174	NAC domain-containing protein 19
3swp_C	9e-74	9	167	20	174	NAC domain-containing protein 19
3swp_D	9e-74	9	167	20	174	NAC domain-containing protein 19
4dul_A	1e-73	9	167	17	171	NAC domain-containing protein 19
4dul_B	1e-73	9	167	17	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.3318	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269\|PubMed:29760199}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00221	DAP	Transfer from AT1G69490	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF185419	0.0	EF185419.1 Citrus sinensis NAC domain protein (NAC) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006438726.1	0.0	NAC transcription factor 29
Refseq	XP_015387126.1	0.0	NAC transcription factor 29 isoform X1
Swissprot	K4BWV2	1e-120	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A067GTM1	0.0	A0A067GTM1_CITSI; Uncharacterized protein
TrEMBL	V4TQ33	0.0	V4TQ33_9ROSI; Uncharacterized protein
STRING	XP_006438726.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7707	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-115	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	Ciclev10032304m
Entrez Gene	18043968

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]