PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WRKY

Protein Properties

Length: 292aa MW: 32047.3 Da PI: 6.6497

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10032283m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.5	5.6e-33	143	200	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+ Ciclev10032283m 143 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH 200 8******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.1E-34	127	201	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-28	134	200	IPR003657	WRKY domain
PROSITE profile	PS50811	29.712	137	202	IPR003657	WRKY domain
SMART	SM00774	3.2E-38	142	201	IPR003657	WRKY domain
Pfam	PF03106	9.6E-26	143	200	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MDDSSKEKSD RGQSSWKLGE PPDAGCVSYI LSEFGWNLQE HESSTSYFAA DHERSDLAGN 60 ISSSFPAETT TDGGGLTNPG RSADVSTSNP SVSSSSSEDP TEKSTGSGGK PPEIPSKARK 120 KGQKRIRQPR FAFMTKSEVD HLEDGYRWRK YGQKAVKNSP FPRSYYRCTN SKCTVKKRVE 180 RSSEDPTIVI TTYEGQHCHH TVGFPRGGLI NHEAAAFASH LTHAIPPYYY HQGVQITQET 240 PGIKQQSHEE ELIPVEAREH EPNALPEPPA LPPPTDEGLL GDIVPPGMRN R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-25	132	199	7	74	Probable WRKY transcription factor 4
2lex_A	2e-25	132	199	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00067	PBM	Transfer from AT1G69310	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006438808.1	0.0	probable WRKY transcription factor 57
Refseq	XP_006483053.1	0.0	probable WRKY transcription factor 57
Refseq	XP_006483054.1	0.0	probable WRKY transcription factor 57
Refseq	XP_006483055.1	0.0	probable WRKY transcription factor 57
Refseq	XP_006483056.1	0.0	probable WRKY transcription factor 57
Swissprot	Q9C983	2e-78	WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBL	A0A2H5N9L8	0.0	A0A2H5N9L8_CITUN; Uncharacterized protein
TrEMBL	V4TK80	0.0	V4TK80_9ROSI; Uncharacterized protein
STRING	XP_006483053.1	0.0	(Citrus sinensis)
STRING	XP_006438805.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4995	27	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	4e-67	WRKY DNA-binding protein 57

Link Out ? help Back to Top
Phytozome	Ciclev10032283m
Entrez Gene	18043901

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Jiang Y,Qiu Y,Hu Y,Yu D Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa. Front Plant Sci, 2016. 7: p. 145 [PMID:26904091] Jiang Y,Yu D The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance. Plant Physiol., 2016. 171(4): p. 2771-82 [PMID:27268959] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]