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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Ciclev10032229m |
| Common Name | CICLE_v10032229mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
HD-ZIP |
| Protein Properties |
Length: 304aa MW: 34331.4 Da PI: 5.3005 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10032229m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.5 | 2.3e-18 | 92 | 145 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t++q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa+ +
Ciclev10032229m 92 KKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSR 145
45689***********************************************99 PP
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| 2 | HD-ZIP_I/II | 119.6 | 1.6e-38 | 92 | 181 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
kkrrl++ qv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR ++++lEkdy++Lk+ yd+lk++ ++L ke++ L++e+
Ciclev10032229m 92 KKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLEKDYDSLKAVYDKLKDDYDNLLKEKQVLQNEV 181
9**************************************************************************************987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MKRKAMAACG NSVCGSQNVG TLLRNEKLPF YSELLDSFWL SKSPTSLQGP QSKANFENVG 60
EGSAARAPPF QSLDNEDNAY VDFDGWLGQS GKKRRLTATQ VQFLERNFEV ENKLEPERKV 120
QLAKELGLQP RQVAIWFQNR RARSRNQRLE KDYDSLKAVY DKLKDDYDNL LKEKQVLQNE 180
VLSLKDKLLL KEKGKGNLET FDAVTLLVAE PQKPVTSAET KTLFSSVPVV TCKQEDANSA 240
KSDVFDADSP HYTDGNHSSL IDPPDSSHYL LKLEDSCCYD DPPTNSRNFG FSLEDQLFWS 300
WPY*
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