PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032192m
Common NameCICLE_v10032192mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 310aa    MW: 35001.6 Da    PI: 6.4338
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032192mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.11.1e-25135195259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqKe+ ++++prsY+rCt++   gC+++k+v+r ++dp++ ++tY g+H+++
  Ciclev10032192m 135 NDGHAWRKYGQKEILNTKHPRSYFRCTHKyvqGCRATKQVQRRDDDPQMYDTTYIGHHTCR 195
                      8***************************9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-26121195IPR003657WRKY domain
PROSITE profilePS5081120.231129192IPR003657WRKY domain
SuperFamilySSF1182901.31E-24130195IPR003657WRKY domain
SMARTSM007747.6E-38134196IPR003657WRKY domain
PfamPF031061.1E-25135195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGTLCSEKTS REKMAKELVK GKKFAHQLQV LLQKPFEEDG LVSAEDLVVK ILRSFTQTLS  60
VLGTTVTTSC DDDHEKYQQQ QANSCNVNSD DYRRRSEDSG ESKKRPAAKD SVSKRGCYKR  120
KKNSQTWTVV SSTSNDGHAW RKYGQKEILN TKHPRSYFRC THKYVQGCRA TKQVQRRDDD  180
PQMYDTTYIG HHTCRDIISF PQIVAESSEP NWGSTISTGG SFVVSSSSSI PTEEIKQECK  240
EETTSTDHQD LSSLDSIAWE DFVSFQSSDE PEAAAMVFSC NNNKMISSHS LDMYNDFEHG  300
FHFDDSGIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-26128195269OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102121KKRPAAKDSVSKRGCYKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435943.10.0probable WRKY transcription factor 70
RefseqXP_006486150.10.0probable WRKY transcription factor 70
TrEMBLA0A2H5PNJ40.0A0A2H5PNJ4_CITUN; Uncharacterized protein
TrEMBLV4SN490.0V4SN49_9ROSI; Uncharacterized protein
STRINGXP_006486150.10.0(Citrus sinensis)
STRINGXP_006435943.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40612757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-46WRKY DNA-binding protein 70