PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032189m
Common NameCICLE_v10031937mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 310aa    MW: 34297.4 Da    PI: 7.192
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032189mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like32.81.5e-101233355
          G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                     +++m+++gLtl+h+kSHLQkYRl
  Ciclev10032189m  1 MRVMGIPGLTLYHLKSHLQKYRL 23
                     789*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-9124IPR009057Homeodomain-like
PfamPF143791.0E-2269115IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MRVMGIPGLT LYHLKSHLQK YRLGKSQHVE ACIDNKQVVE YKETQSSSDG HVNRNISDGT  60
LNQLNESLQI AQALQVQMEV QRKLHEQIEV QRHLQLRIEA QGKYLQSVLK KAQETLAGYS  120
SSSAGVELAK AELSQLVSMV SMGCPSSSVS ELTEAGTSSL KDFERKQIRS TICSMESSLT  180
SSESSGRKEE KQPVNEIGDT DTCKSNKTTP ELQLMDIHIH PQDKPCKARS SNQASGRKRR  240
ESTISDGFPD EQQTAKRLAT QNEKCDDQLR NTGLVGRFDL NSQYQNESES GSKAIDLNCK  300
GLDQLNGPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438708.10.0myb family transcription factor PHL8 isoform X3
RefseqXP_006483142.10.0myb family transcription factor PHL8-like isoform X4
SwissprotF4I2743e-55PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLV4TJZ60.0V4TJZ6_9ROSI; Uncharacterized protein
STRINGXP_006438708.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.13e-57G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]