PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 355aa MW: 39252.2 Da PI: 6.7217

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10031946m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl Ciclev10031946m 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	45.6	1.6e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Ciclev10031946m 67 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.075	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.46E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	7.66E-11	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.0E-25	65	117	IPR009057	Homeodomain-like
SMART	SM00717	3.5E-13	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.75	66	116	IPR017930	Myb domain
Pfam	PF00249	6.3E-13	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	8.42E-9	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009416	Biological Process	response to light stimulus
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0010118	Biological Process	stomatal movement
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKKFQ 120 SAALEPHMPQ DSSATSNNTH PFAKTGNSFS NERRSLDFSN QAASNNNLRL HQQGSSYASS 180 TENISRLLEG WMRSSPKTSS NSSSALLIKG NGNIFDNRSI ENSVGTYRPK EEQEGGGSGG 240 DGGGGDLISN EEFISILSFE QNLNNVTWDK ASTGDSSAKG SSTQDSANNE DQSTKVNNNN 300 NDNNDIIANA EKKQRSDQNI HNPPLSFLEK WLLDESTGQV EEINQIMELS DSMF*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKKFQ  120
SAALEPHMPQ DSSATSNNTH PFAKTGNSFS NERRSLDFSN QAASNNNLRL HQQGSSYASS  180
TENISRLLEG WMRSSPKTSS NSSSALLIKG NGNIFDNRSI ENSVGTYRPK EEQEGGGSGG  240
DGGGGDLISN EEFISILSFE QNLNNVTWDK ASTGDSSAKG SSTQDSANNE DQSTKVNNNN  300
NDNNDIIANA EKKQRSDQNI HNPPLSFLEK WLLDESTGQV EEINQIMELS DSMF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-23	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During seed development, gradually down-regulated towards the onset of ripening (veraison). During berry skin development, dramatic decrease to full repression at veraison, followed by a slight increase towards ripening. In flowers, barely detectable in stamens, at the interface of filaments and anthers. {ECO:0000269\|PubMed:22018045}.
Uniprot	TISSUE SPECIFICITY: Restricted to stomatal guard cells. Mostly expressed in leaves, cotyledons, hypocotyls, seeds and ripened berry skins. {ECO:0000269\|PubMed:22018045}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00132	DAP	Transfer from AT1G08810	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP229564	1e-119	KP229564.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB08) mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006437263.1	0.0	myb-related protein 306
Swissprot	B3VTV7	1e-131	MYB60_VITVI; Transcription factor MYB60
TrEMBL	V4SRQ2	0.0	V4SRQ2_9ROSI; Uncharacterized protein
STRING	XP_006437263.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	2e-96	myb domain protein 60

Link Out ? help Back to Top
Phytozome	Ciclev10031946m
Entrez Gene	18043837

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]