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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10031623m |
| Common Name | CICLE_v10031623mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
NAC |
| Protein Properties |
Length: 428aa MW: 48301.6 Da PI: 7.1094 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10031623m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.3 | 2.5e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
l pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s
Ciclev10031623m 14 LLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYS 106
579***************************.89***************8888999*************************************** PP
NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ +++ +glkk+Lvfykg+a kg ktdW+mhe+rl
Ciclev10031623m 107 SeGNKCIGLKKSLVFYKGKAAKGIKTDWMMHEFRL 141
956667***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 428 aa
Download sequence Send
to blast |
MDERNENDKL DEILLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIKQLD IYKYDPWDLP 60
KLATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGN KCIGLKKSLV 120
FYKGKAAKGI KTDWMMHEFR LPSLIDSVPP KRFMDKTIPA NDSWAICRIF KKTNSTAQRA 180
LSQSWVSPLP ETASSTDAHV KSSYNTQFSL TSSMAQYFNC NNDIQQQPSS SSSCLTNTST 240
NSTFSPFDFV PYKPINPVII SKPHHQLPNI SSGDLTSSFM FSPFEPTIPA AKCNINDVSS 300
VLLSMSSDSM LGDFGKASDQ CIDFVGSQDQ YSGFSTTALP HYEMQAAVTD ISNGDHHLHH 360
EDVLMKNQHM MNHVDDQWES TVRPIGFPFS LPMMSLAAET WKPSSLWDCS SCPREISTSV 420
STSKFML*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-55 | 5 | 179 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-55 | 5 | 179 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-55 | 5 | 179 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-55 | 5 | 179 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-55 | 5 | 179 | 7 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-55 | 5 | 179 | 7 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
