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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10031606m |
Common Name | CICLE_v10031606mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
NAC |
Protein Properties |
Length: 431aa MW: 48268.1 Da PI: 5.4272 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10031606m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 171 | 3.7e-53 | 29 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
l+pGfrFhPtdeelv++yLk+kv ++++++ ++i evdiyk ePwdL + +k++++ewyfFs+ dkky +g r nrat++gyWkatgkd+e+
Ciclev10031606m 29 LAPGFRFHPTDEELVSYYLKRKVYNRPFRF-NAIGEVDIYKNEPWDLAdfSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREI 121
579*************************99.89**************8544889999************************************* PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ +++l+g+kktLvf++grap+g++t+Wvmheyrl
Ciclev10031606m 122 RR-ESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRL 156
*9.999****************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009555 | Biological Process | pollen development |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0005730 | Cellular Component | nucleolus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 431 aa
Download sequence Send
to blast |
MGNEGLALTT TTPATPATPA AAKKNTAALA PGFRFHPTDE ELVSYYLKRK VYNRPFRFNA 60 IGEVDIYKNE PWDLADFSWM KTRDQEWYFF SPLDKKYVNG ARMNRATRKG YWKATGKDRE 120 IRRESQLIGM KKTLVFHSGR APDGQRTNWV MHEYRLVEEE FEQLGPGLAS YVLCRVFHKN 180 NIGPPNGNRY APFVEEEWDD GMATFPGEDA ADEVVAGDDV GTERNAGERM RVEQDSQSIN 240 KEPLNINELP KDAQNDLLDC KRERTDGCPS LCVLNTQAPL PLLQYKRRRQ NDSGSNRSNG 300 SDNSSGAGQD PSSSTTTTAE TATMMATNSA TTAAISALLE FSLMESIEPR ETSCVPTAAP 360 FEANDFDSQM PPDCAKLIKE LKNQVREVVV ERATLKLDLM SAQAMINILH SRIDFLTREN 420 EDLKRKNKAA *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 1e-47 | 28 | 181 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-47 | 28 | 181 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-47 | 28 | 181 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-47 | 28 | 181 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-47 | 28 | 181 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-47 | 28 | 181 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-47 | 28 | 181 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-47 | 28 | 181 | 19 | 170 | NAC domain-containing protein 19 |
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |