PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031606m
Common NameCICLE_v10031606mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 431aa    MW: 48268.1 Da    PI: 5.4272
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031606mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1713.7e-53291561128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      l+pGfrFhPtdeelv++yLk+kv ++++++ ++i evdiyk ePwdL   + +k++++ewyfFs+ dkky +g r nrat++gyWkatgkd+e+
  Ciclev10031606m  29 LAPGFRFHPTDEELVSYYLKRKVYNRPFRF-NAIGEVDIYKNEPWDLAdfSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREI 121
                      579*************************99.89**************8544889999************************************* PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + +++l+g+kktLvf++grap+g++t+Wvmheyrl
  Ciclev10031606m 122 RR-ESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRL 156
                      *9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-6025180IPR003441NAC domain
PROSITE profilePS5100557.67629179IPR003441NAC domain
PfamPF023651.8E-2831156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGNEGLALTT TTPATPATPA AAKKNTAALA PGFRFHPTDE ELVSYYLKRK VYNRPFRFNA  60
IGEVDIYKNE PWDLADFSWM KTRDQEWYFF SPLDKKYVNG ARMNRATRKG YWKATGKDRE  120
IRRESQLIGM KKTLVFHSGR APDGQRTNWV MHEYRLVEEE FEQLGPGLAS YVLCRVFHKN  180
NIGPPNGNRY APFVEEEWDD GMATFPGEDA ADEVVAGDDV GTERNAGERM RVEQDSQSIN  240
KEPLNINELP KDAQNDLLDC KRERTDGCPS LCVLNTQAPL PLLQYKRRRQ NDSGSNRSNG  300
SDNSSGAGQD PSSSTTTTAE TATMMATNSA TTAAISALLE FSLMESIEPR ETSCVPTAAP  360
FEANDFDSQM PPDCAKLIKE LKNQVREVVV ERATLKLDLM SAQAMINILH SRIDFLTREN  420
EDLKRKNKAA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-472818119170NAC domain-containing protein 19
3swm_B1e-472818119170NAC domain-containing protein 19
3swm_C1e-472818119170NAC domain-containing protein 19
3swm_D1e-472818119170NAC domain-containing protein 19
3swp_A1e-472818119170NAC domain-containing protein 19
3swp_B1e-472818119170NAC domain-containing protein 19
3swp_C1e-472818119170NAC domain-containing protein 19
3swp_D1e-472818119170NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436533.10.0NAC domain containing protein 50
RefseqXP_006485309.10.0NAC domain containing protein 50
SwissprotQ9SQX91e-143NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A067E8M20.0A0A067E8M2_CITSI; Uncharacterized protein
TrEMBLA0A2H5PQ770.0A0A2H5PQ77_CITUN; Uncharacterized protein
TrEMBLV4SPQ50.0V4SPQ5_9ROSI; Uncharacterized protein
STRINGXP_006485309.10.0(Citrus sinensis)
STRINGXP_006436533.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.21e-128NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]