PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10031433m

Common Name

CICLE_v10031433mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 469aa MW: 51648.2 Da PI: 8.213

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10031433m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127	5.7e-40	118	178	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss Ciclev10031433m 118 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSS 178 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	115	175	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	120	176	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.947	122	176	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	124	160	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MSEVKDSAIK LFGQMIPLSL LKFQQQQGPE TLANDHSASD DDDHHHHQEA CCDRNPETAL 60 QDEHEDVTSK QKDPIKSSGN SDNPKTLSVD RETRSLKSSK NGEQSETSNS QEKTLKKPDK 120 ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG RRKNKSSSAS 180 NYRQIMISEA LRTFQANASG GVHKPYSGNN GTILTFGSDS PLHESVASVP NLSDKSQNCL 240 RNGFHRSEQK ILVSGTDNGS SITASSSLEK GGNCTSQDIR TKNYRGSVPQ VPYFPGPPWP 300 HHWNTPMPPP GFYPSGFPVS FYPETTYWGC AVPGYCNMPC VPPNASLQSQ FVPKTLSTPT 360 LGKHSRDGDI ITPASTEKEE PSTGSRNSER CVLVPKTLRI DDPSEAAKSS IWATLGIKNE 420 KTTSAGECLF KGFQSKSDHR NYIAETSEVL QANPAALSRS LNFHERHN*

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MSEVKDSAIK LFGQMIPLSL LKFQQQQGPE TLANDHSASD DDDHHHHQEA CCDRNPETAL  60
QDEHEDVTSK QKDPIKSSGN SDNPKTLSVD RETRSLKSSK NGEQSETSNS QEKTLKKPDK  120
ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG RRKNKSSSAS  180
NYRQIMISEA LRTFQANASG GVHKPYSGNN GTILTFGSDS PLHESVASVP NLSDKSQNCL  240
RNGFHRSEQK ILVSGTDNGS SITASSSLEK GGNCTSQDIR TKNYRGSVPQ VPYFPGPPWP  300
HHWNTPMPPP GFYPSGFPVS FYPETTYWGC AVPGYCNMPC VPPNASLQSQ FVPKTLSTPT  360
LGKHSRDGDI ITPASTEKEE PSTGSRNSER CVLVPKTLRI DDPSEAAKSS IWATLGIKNE  420
KTTSAGECLF KGFQSKSDHR NYIAETSEVL QANPAALSRS LNFHERHN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006483138.1	0.0	cyclic dof factor 3-like
TrEMBL	V4TQ22	0.0	V4TQ22_9ROSI; Uncharacterized protein
STRING	XP_006438711.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-94	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Ciclev10031433m
Entrez Gene	18043515