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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10031398m | ||||||||
Common Name | CICLE_v10031135mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 480aa MW: 51836.2 Da PI: 6.7926 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.4 | 3.1e-09 | 359 | 406 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Ciclev10031398m 359 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 406 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.24E-17 | 353 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.11E-10 | 353 | 410 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.2E-17 | 355 | 424 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.663 | 355 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-6 | 359 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 361 | 411 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MENEFFLNAG IPAPVAMPIW PSAAMEIQIQ ATNEMMNCSS EQSSDCFFNP NNWEKSTDHS 60 LQFDSALSSI VSSPAASNSN ISNESSVIRE LIGKLGNIGN NSGAGEITPN SLAPYINNNS 120 NNNNGSSSTN ASCYTTPLNS PPKLNLPMSL GNSMPLNSSV AEFSADPGFA ERAARFSRFG 180 SRSFNGRSTG QFVPNHNPDQ FGLSRSNNNP NPMTANEKLP RVSSSPSLKV LGSQAQATGN 240 KSPQDRSELA NSQEESSVSE QVPNDFNSRK RKAVSKGKGK ETAASPSVNN TTKVAEANAS 300 ESSKNKRCKP NEGKANENGA VKAEDEGDDK QAKANNAKPP EPPKDYIHVR ARRGQATDSH 360 SLAERVRREK ISERMKLLQD LVPGCNKVTG KALMLDEIIN YVQSLQRQVE FLSMKLASVN 420 TRLELNVDAL MSKDFQNFGE DDLQSIVQMG FGQNPNSETS LQSQSFHGSN QAPHMKAEL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.4130 | 0.0 | fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00660 | PBM | Transfer from Pp3c6_9520 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015387639.1 | 0.0 | transcription factor bHLH78 isoform X2 | ||||
TrEMBL | V4TFT2 | 0.0 | V4TFT2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006437241.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 7e-73 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10031398m |
Entrez Gene | 18044060 |