PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GRAS

Protein Properties

Length: 481aa MW: 53863.9 Da PI: 6.2056

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10031389m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	464.2	7.3e-142	49	475	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA++v++g+ e+a+ L+++s+laspdgd++qR+aayfteALa r+++ +++l kal++++ s + +ee+ ++klf+e++P+lk+s Ciclev10031389m 49 LIHLLVACANHVAAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRMLKAWPGLHKALNSTKIS--SITEEIIVQKLFFELCPFLKLS 140 689***********************************************************999998..59**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 ++++NqaI+ea+ege++vHiiD++ +++QW++Llq+L++Rpegpp+lRiTg+++ +ke le+++ rL++ Ae+l++pf+fn+ ++++le+ Ciclev10031389m 141 YVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQFNP-IVSKLEN 229 ***************************************************....9**********************.7999* PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrll.................................................................des 217 ++le+L k+gEalaV++vlq+hrll + s Ciclev10031389m 230 VDLESL-RKTGEALAVSSVLQMHRLLatddemprrtspsasrtsssshlqrvlhmnrrtlgewlekdsvlmfspspdsasasasastplslAAS 322 ****.589*********************************************************************99664333333 PP GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311 + ++L++++slsPkvvvv+eqe++hn++s++er++eal++y+a+fd+le++++r+s er+kvE++l+g+ei+n++aceg errerhe+ Ciclev10031389m 323 P----KMGSFLNALWSLSPKVVVVTEQESNHNGPSLMERVMEALNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACEGIERRERHEK 412 3....5677********************************************************************************* PP GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 lekW rle aGF+ vpls++ + qa++ll+ ++ dgy+++ee+g+lv++W+dr+L+svSaWr Ciclev10031389m 413 LEKWILRLELAGFGRVPLSYHGMLQARRLLQSYGYDGYKIKEENGCLVICWQDRTLFSVSAWR 475 ************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.16	23	455	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-139	49	475	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MAGMVQEDGA SSASSSPLQF FSMMSLSPAF GSPYPWLREL KSEERGLCLI HLLVACANHV 60 AAGSVENANI GLEQISHLAS PDGDTVQRIA AYFTEALADR MLKAWPGLHK ALNSTKISSI 120 TEEIIVQKLF FELCPFLKLS YVITNQAIVE AMEGEKMVHI IDLNSFEPAQ WINLLQTLSA 180 RPEGPPHLRI TGIHEQKEVL EQMALRLTEE AEKLDIPFQF NPIVSKLENV DLESLRKTGE 240 ALAVSSVLQM HRLLATDDEM PRRTSPSASR TSSSSHLQRV LHMNRRTLGE WLEKDSVLMF 300 SPSPDSASAS ASASTPLSLA ASPKMGSFLN ALWSLSPKVV VVTEQESNHN GPSLMERVME 360 ALNFYAAMFD CLESTMSRAS IERQKVEKML FGEEIKNIIA CEGIERRERH EKLEKWILRL 420 ELAGFGRVPL SYHGMLQARR LLQSYGYDGY KIKEENGCLV ICWQDRTLFS VSAWRFRRYD 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MAGMVQEDGA SSASSSPLQF FSMMSLSPAF GSPYPWLREL KSEERGLCLI HLLVACANHV  60
AAGSVENANI GLEQISHLAS PDGDTVQRIA AYFTEALADR MLKAWPGLHK ALNSTKISSI  120
TEEIIVQKLF FELCPFLKLS YVITNQAIVE AMEGEKMVHI IDLNSFEPAQ WINLLQTLSA  180
RPEGPPHLRI TGIHEQKEVL EQMALRLTEE AEKLDIPFQF NPIVSKLENV DLESLRKTGE  240
ALAVSSVLQM HRLLATDDEM PRRTSPSASR TSSSSHLQRV LHMNRRTLGE WLEKDSVLMF  300
SPSPDSASAS ASASTPLSLA ASPKMGSFLN ALWSLSPKVV VVTEQESNHN GPSLMERVME  360
ALNFYAAMFD CLESTMSRAS IERQKVEKML FGEEIKNIIA CEGIERRERH EKLEKWILRL  420
ELAGFGRVPL SYHGMLQARR LLQSYGYDGY KIKEENGCLV ICWQDRTLFS VSAWRFRRYD  480
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-39	32	477	1	380	Protein SCARECROW
5b3h_D	2e-39	32	477	1	380	Protein SCARECROW
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006438891.1	0.0	scarecrow-like protein 3
Refseq	XP_024041784.1	0.0	scarecrow-like protein 3
Swissprot	Q9LPR8	0.0	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A2H5N9G0	0.0	A0A2H5N9G0_CITUN; Uncharacterized protein
TrEMBL	V4TQJ9	0.0	V4TQJ9_9ROSI; Uncharacterized protein
STRING	XP_006438891.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4098	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	0.0	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	Ciclev10031389m
Entrez Gene	18045496

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]