PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031225m
Common NameCICLE_v10031225mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 526aa    MW: 56735.4 Da    PI: 7.7069
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031225mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.2e-33250306259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dD ynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Ciclev10031225m 250 DDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHP 306
                      89***************************************.***************8 PP
2WRKY106.51.4e-33420478159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Ciclev10031225m 420 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASTDPKAVITTYEGKHNHD 478
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-29238308IPR003657WRKY domain
PROSITE profilePS5081123.41244308IPR003657WRKY domain
SuperFamilySSF1182902.88E-26245308IPR003657WRKY domain
SMARTSM007745.4E-37249307IPR003657WRKY domain
PfamPF031062.2E-25250306IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-37405480IPR003657WRKY domain
SuperFamilySSF1182901.31E-29412480IPR003657WRKY domain
PROSITE profilePS5081138.871415480IPR003657WRKY domain
SMARTSM007743.7E-39420479IPR003657WRKY domain
PfamPF031064.1E-26421478IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MAGNEDRAST ASSASLKPST TPSRPTITLP PRASFTESLF NNNGPGSGFG FGFSPGPMTL  60
VSNFFADSDD CKSFSQLLAG AMSSPAAGHL RPNFSEQAGR GSGDAEAGDA DFRFKQNRPA  120
GLVIAQPPPI FAVPPGLSPA TLLESPNFGL FSPAQGAFGM THQQALAQVT AQAAQAQSHT  180
QIPAEYPSSL SSAPTTSMTQ VSSLTANTTT NQQMTPLMPD SSVQMKESSD FSHSDQRPQS  240
SSYVSDKPAD DPYNWRKYGQ KHVKGSEFPR SYYKCTHPNC PVKKKVERSL DGQVTEIIYK  300
GQHNHPPPQS NKRAKDAGSL NGNLNNQGSS ELAPQLKEGA GYSMSKKDQE SSQVTPENIS  360
GTSDSEEVGD AETAVFEKDE DEPDAKRRST EIRVSEPTAS HRTVTEPRII VQTTSEVDLL  420
DDGYRWRKYG QKVVKGNPYP RSYYKCTTTG CNVRKHVERA STDPKAVITT YEGKHNHDVP  480
AGKNSSHNTA NSNASQIKPH NTGTNLGNNN QQPIARLRLK EEHLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-42250481878Probable WRKY transcription factor 4
2lex_A1e-42250481878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438767.10.0probable WRKY transcription factor 3
SwissprotQ9XI900.0WRKY4_ARATH; Probable WRKY transcription factor 4
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLV4TFA60.0V4TFA6_9ROSI; Uncharacterized protein
STRINGXP_006438767.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-165WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]