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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10031143m | ||||||||
Common Name | CICLE_v10031028mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 552aa MW: 60688.1 Da PI: 7.762 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.6 | 8.4e-17 | 355 | 401 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Ciclev10031143m 355 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 401 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.00E-17 | 344 | 405 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-20 | 349 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-19 | 350 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.457 | 351 | 400 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-14 | 355 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-18 | 357 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0009693 | Biological Process | ethylene biosynthetic process | ||||
GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MQQIFVYSAM NPCIPDWNFE GDIPTSNQMK PMGQDNELVE LLWQNGHVVL SSQAQTQRKP 60 SLNHNEPRQV QKQTLRGSGS YGNSSNLIQD DETVSWIHCP IEDSFEKDFY SHLFSELPPS 120 GPMEVDKHTR QLREEKMVKF DPPGAVTSSQ HPNVNHSVVP ELQRNAMPPP RFEVHDAAQQ 180 NKNLGDLGKV VNFSQSTAPP KGELGPCSGQ FDRKRSGNLT QGEVRECSMM TVGSSHCGSN 240 QVAYDLDMSR ASSSGVGTTG LSPGKLNDDV RKVISLSERG KTETIEPTVT SSSGGSGSSF 300 NRTSKQSTGD NSLKRKSRDA VDSECQSEAA GFESGAGNKT AQRSGSCRRS RAAEVHNLSE 360 RRRRDRINEK MRALQELIPH CNKTDKASML DEAIEYLKSL QLQLQMSQVM WMGSGMAPLM 420 FPGMQHYMSR MGMGMGPPPL PSVTNPIHFS RVPLVDQSMS MAQAQNRAVM CQASVLNPVN 480 YQNQMQNSNF TDQYARYMGF HPMQANSQPM NMFRFGSPTM QNQIVSLPSS SCVPFSGGAA 540 TDNSPLSGKM G* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 359 | 364 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00082 | ChIP-seq | Transfer from AT3G59060 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006437068.1 | 0.0 | transcription factor PIF4 isoform X1 | ||||
TrEMBL | V4TFE8 | 0.0 | V4TFE8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006437070.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59060.1 | 2e-42 | phytochrome interacting factor 3-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10031143m |
Entrez Gene | 18043439 |