PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031135m
Common NameCICLE_v10031135mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 554aa    MW: 60065.4 Da    PI: 6.4334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031135mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.7e-09359406455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Ciclev10031135m 359 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 406
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.02E-16353423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-10353410No hitNo description
Gene3DG3DSA:4.10.280.108.9E-17355424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663355405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-6359406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10361411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MENEFFLNAG IPAPVAMPIW PSAAMEIQIQ ATNEMMNCSS EQSSDCFFNP NNWEKSTDHS  60
LQFDSALSSI VSSPAASNSN ISNESSVIRE LIGKLGNIGN NSGAGEITPN SLAPYINNNS  120
NNNNGSSSTN ASCYTTPLNS PPKLNLPMSL GNSMPLNSSV AEFSADPGFA ERAARFSRFG  180
SRSFNGRSTG QFVPNHNPDQ FGLSRSNNNP NPMTANEKLP RVSSSPSLKV LGSQAQATGN  240
KSPQDRSELA NSQEESSVSE QVPNDFNSRK RKAVSKGKGK ETAASPSVNN TTKVAEANAS  300
ESSKNKRCKP NEGKANENGA VKAEDEGDDK QAKANNAKPP EPPKDYIHVR ARRGQATDSH  360
SLAERVRREK ISERMKLLQD LVPGCNKVTG KALMLDEIIN YVQSLQRQVE FLSMKLASVN  420
TRLELNVDAL MSKDIYQPNK PLPHSIFQID SSASAFFSHQ PQQNPALHGN ISNGTMTQCP  480
VDPLDNALCR NLSMQLPQLE QFTETIPQFQ NFGEDDLQSI VQMGFGQNPN SETSLQSQSF  540
HGSNQAPHMK AEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.41301e-134fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437241.10.0transcription factor bHLH62
TrEMBLV4TKZ40.0V4TKZ4_9ROSI; Uncharacterized protein
STRINGXP_006437241.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.18e-98bHLH family protein