PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031100m
Common NameCICLE_v10031100mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 570aa    MW: 64807 Da    PI: 6.753
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031100mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.45.4e-274025256128
              NAM   6 rFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                       F Ptd elv+++L +kv++++  + +  ik++++y++eP++L   ++++++++ yfF++ ++ ++     nr+++ gyW++tg    v +k+g
  Ciclev10031100m 402 AFIPTDTELVTYHLMNKVSARSYGELDRfIKDIELYDYEPSELSsLAYHSGHDKKYFFTRLSQPAR---TVNRQAQGGYWRKTGMPSYVNDKDG 492
                      69********************6555544**************955777788899*****998765...5899999****************** PP

              NAM  98 elvglkktLvfykgrap..kgektdWvmheyrl 128
                       +v +k++L+++k+++p  k+ekt+W+m+ey l
  Ciclev10031100m 493 DAVATKTSLTYFKKQDPtsKPEKTHWLMKEYML 525
                      ************8766511567*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-26388545IPR003441NAC domain
PROSITE profilePS5100529.715397547IPR003441NAC domain
PfamPF023653.2E-14401524IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MEHIETGRVP LRSVNSRDSE VLCKHKKCGL AILFFILEAV SVVLDIFEKS KGASLAAFLF  60
SAFGFAMTIY VCFLERTFTA IKPQADRQLG ILDIAFSVLQ LIATLIHLIL LVSDAKYNYN  120
ASVLFPLAFA IIAVLFVFKE RDTSTDSSRQ DLSPSANDSL LSTPFELYLS GITVEGDNSE  180
NNLRLSGQVQ EGPGIEKFRI IGEAKPGGKL LGYPVNGTTL CTFQWIRFLE DDTRHSIEGA  240
TEPEYVVTAD DINKLIALEH TTIDDEGHEG KLVTVFANEH SKIKCDPDMQ SKVDMHISRG  300
QAAFRVLLLI NSSENTWEPA TLSFTQSRFH VKINSTDVVI SEGDLFNIIE IEIPIGLSRQ  360
FILRRLDGES HYYITNNDRM RDTLVLTMRT FRRMVLPPTV AAFIPTDTEL VTYHLMNKVS  420
ARSYGELDRF IKDIELYDYE PSELSSLAYH SGHDKKYFFT RLSQPARTVN RQAQGGYWRK  480
TGMPSYVNDK DGDAVATKTS LTYFKKQDPT SKPEKTHWLM KEYMLLKSQQ PNQNDETPWT  540
LCVLYDFQRK RREGPFKRTE KNLWRRNNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-1239354814166NO APICAL MERISTEM PROTEIN
1ut4_B3e-1239354814166NO APICAL MERISTEM PROTEIN
1ut7_A3e-1239354814166NO APICAL MERISTEM PROTEIN
1ut7_B3e-1239354814166NO APICAL MERISTEM PROTEIN
3swm_A4e-1239354817169NAC domain-containing protein 19
3swm_B4e-1239354817169NAC domain-containing protein 19
3swm_C4e-1239354817169NAC domain-containing protein 19
3swm_D4e-1239354817169NAC domain-containing protein 19
3swp_A4e-1239354817169NAC domain-containing protein 19
3swp_B4e-1239354817169NAC domain-containing protein 19
3swp_C4e-1239354817169NAC domain-containing protein 19
3swp_D4e-1239354817169NAC domain-containing protein 19
4dul_A3e-1239354814166NAC domain-containing protein 19
4dul_B3e-1239354814166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437371.10.0uncharacterized protein LOC18043989 isoform X1
TrEMBLV4TLA90.0V4TLA9_9ROSI; Uncharacterized protein
STRINGXP_006437371.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2105323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-16NAC domain containing protein 90