PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031066m
Common NameCICLE_v10031028mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 581aa    MW: 64189.1 Da    PI: 8.1232
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031066mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.59e-17346392455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Ciclev10031066m 346 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 392
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.14E-17335396No hitNo description
SuperFamilySSF474591.31E-20340404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-14346392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-20346400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-18348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MNPCIPDWNF EGDIPTSNQM KPMGQDNELV ELLWQNGHVV LSSQAQTQRK PSLNHNEPRQ  60
VQKQTLRGSG SYGNSSNLIQ DDETVSWIHC PIEDSFEKDF YSHLFSELPP SGPMEVDKHT  120
RQLREEKMVK FDPPGAVTSS QHPNVNHSVV PELQRNAMPP PRFEVHDAAQ QNKNLGDLGK  180
VVNFSQSTAP PKGELGPCSG QFDRKRSGNL TQGEVRECSM MTVGSSHCGS NQVAYDLDMS  240
RASSSGVGTT GLSPGKLNDD VRKVISLSER GKTETIEPTV TSSSGGSGSS FNRTSKQSTG  300
DNSLKRKSRD AVDSECQSEA AGFESGAGNK TAQRSGSCRR SRAAEVHNLS ERRRRDRINE  360
KMRALQELIP HCNKTDKASM LDEAIEYLKS LQLQLQVMWM GSGMAPLMFP GMQHYMSRMG  420
MGMGPPPLPS VTNPIHFSRV PLVDQSMSMA QAQNRAVMCQ ASVLNPVNYQ NQMQNSNFTD  480
QYARYMGFHP MQANSQPMNM FRFGSPTMQN QIVSLPSSSC VPFSGGAATD NSPLSGKMGN  540
SFQSFLQFYS IVFELGRLHY SLETIMLLFH GRATSYFKLK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350355ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042297.10.0transcription factor PIF4 isoform X2
TrEMBLV4TKJ10.0V4TKJ1_9ROSI; Uncharacterized protein
STRINGXP_006437070.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.11e-50phytochrome interacting factor 3-like 6