PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031028m
Common NameCICLE_v10031028mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 593aa    MW: 65603.8 Da    PI: 8.1216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031028mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.49.2e-17355401455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Ciclev10031028m 355 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 401
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.19E-17344405No hitNo description
SuperFamilySSF474592.49E-20349414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-19350406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-14355401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-18357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MQQIFVYSAM NPCIPDWNFE GDIPTSNQMK PMGQDNELVE LLWQNGHVVL SSQAQTQRKP  60
SLNHNEPRQV QKQTLRGSGS YGNSSNLIQD DETVSWIHCP IEDSFEKDFY SHLFSELPPS  120
GPMEVDKHTR QLREEKMVKF DPPGAVTSSQ HPNVNHSVVP ELQRNAMPPP RFEVHDAAQQ  180
NKNLGDLGKV VNFSQSTAPP KGELGPCSGQ FDRKRSGNLT QGEVRECSMM TVGSSHCGSN  240
QVAYDLDMSR ASSSGVGTTG LSPGKLNDDV RKVISLSERG KTETIEPTVT SSSGGSGSSF  300
NRTSKQSTGD NSLKRKSRDA VDSECQSEAA GFESGAGNKT AQRSGSCRRS RAAEVHNLSE  360
RRRRDRINEK MRALQELIPH CNKTDKASML DEAIEYLKSL QLQLQMSQVM WMGSGMAPLM  420
FPGMQHYMSR MGMGMGPPPL PSVTNPIHFS RVPLVDQSMS MAQAQNRAVM CQASVLNPVN  480
YQNQMQNSNF TDQYARYMGF HPMQANSQPM NMFRFGSPTM QNQIVSLPSS SCVPFSGGAA  540
TDNSPLSGKM GNSFQSFLQF YSIVFELGRL HYSLETIMLL FHGRATSYFK LK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359364ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437068.10.0transcription factor PIF4 isoform X1
TrEMBLV4TFE80.0V4TFE8_9ROSI; Uncharacterized protein
STRINGXP_006437070.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34682561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.13e-42phytochrome interacting factor 3-like 6