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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10030684m | ||||||||
Common Name | CICLE_v10030684mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NF-X1 | ||||||||
Protein Properties | Length: 871aa MW: 97362.5 Da PI: 8.4202 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 16.9 | 1.4e-05 | 185 | 203 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H C lCH+GpCppCp+ Ciclev10030684m 185 CG-HFCLLLCHPGPCPPCPK 203 **.***************96 PP | |||||||
2 | zf-NF-X1 | 17.6 | 8.6e-06 | 240 | 256 | 4 | 20 |
zf-NF-X1 4 HkCqklCHeGpCppCpq 20 HkC ++CHeGpCppC++ Ciclev10030684m 240 HKCLQICHEGPCPPCKA 256 ***************95 PP | |||||||
3 | zf-NF-X1 | 16.5 | 1.9e-05 | 397 | 416 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ Ciclev10030684m 397 CGRHACKRRCCNGDCPPCSE 416 ******************85 PP | |||||||
4 | zf-NF-X1 | 17.3 | 1.1e-05 | 418 | 443 | 1 | 20 |
zf-NF-X1 1 CG......kHkCqklCHeGpCppCpq 20 CG +HkC ++CH+G C pCp+ Ciclev10030684m 418 CGkrllckNHKCPSPCHRGACAPCPL 443 777777779***************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50016 | 8.573 | 69 | 141 | IPR019787 | Zinc finger, PHD-finger |
SuperFamily | SSF57850 | 1.06E-6 | 71 | 144 | No hit | No description |
PROSITE profile | PS50089 | 8.801 | 72 | 139 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 72 | 138 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00438 | 0.0022 | 185 | 203 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0011 | 185 | 202 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.06E-7 | 227 | 267 | No hit | No description |
SMART | SM00438 | 0.0037 | 237 | 256 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.5E-4 | 239 | 255 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.74E-8 | 280 | 323 | No hit | No description |
SMART | SM00438 | 0.057 | 290 | 309 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.38 | 290 | 308 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 7.47E-7 | 334 | 383 | No hit | No description |
SMART | SM00438 | 12 | 344 | 364 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 4.1 | 346 | 363 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 7.48E-8 | 387 | 435 | No hit | No description |
SMART | SM00438 | 0.033 | 397 | 416 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0028 | 397 | 415 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.98E-11 | 414 | 462 | No hit | No description |
Pfam | PF01422 | 0.0036 | 418 | 442 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.015 | 424 | 443 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 41 | 487 | 502 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 4.7 | 491 | 501 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 180 | 510 | 555 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 17 | 592 | 625 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.29 | 592 | 602 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.066 | 635 | 653 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 4 | 637 | 652 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 57 | 698 | 720 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000037 | Biological Process | regulation of stomatal complex patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 871 aa Download sequence Send to blast |
MTSSANYQQI LSDSDTDSDN GRTESFPDLS SSILKPYLES TNQSSLATSQ SPSELSKIKS 60 FLASSSSGAL SCLICLERIK PSDPTWHCST LCYSIFHLIC IQSWARQSSD LSASLAASRL 120 PITAEKAAES STWNCPKCRS QYSKSQIPKK YLCFCGKLED PYSEDPWILP HSCNEICNRP 180 LQNNCGHFCL LLCHPGPCPP CPKLVNSSCF CRKFQEVRRC GFKSFSCNKI CSKPLDCRTH 240 KCLQICHEGP CPPCKARAVY MCRCGRVEEE RECCERDFRC ENACGKALDC GKHVCERGCH 300 VGQCGGCPLP GKRTCPCGKR VYEGMSCDVA VPLCGATCDK MLSCRIHRCH DRCHRGPCIG 360 TCRMVIAKLC RCRSLKKEVP CYQDLVCERK CQRMRDCGRH ACKRRCCNGD CPPCSEICGK 420 RLLCKNHKCP SPCHRGACAP CPLMVTISCA CGETQFEVPC GTEKDQKPPK CRKSCHVIPL 480 CRHRSICKPH KCHYGACPPC RLLCEEEYPC GHSCKLSCHG PRPPPNPEFT LKTKKKKSNH 540 QSEVTPGSPC PPCPELIWRS CVGEHIGAER MMVCSDRTQF SCDNLCGNPL PCGNHYCTKY 600 CHALKSQSSL SVETRSAESC EVCSLPCQKE RLPTCPHSCP LPCHPGVCPS CKVLVKRSCH 660 CGSMVHVFEC IYFNTLSEKE QMAARSCGGP CHRKLPYCTH LCPEICHPGQ CPLPEQCCKK 720 VTVRCGCQTL KKEWQCLDVQ AAYRNIGRDP KDISKNQFGL GLLRCNCDCK SKVQVVDSVL 780 QSRKPKVEEK EPATEKHVGK RRKRRECVRV VNQASRLQRI FTAVKWLLLF VTLLVAVAAG 840 LYYGYKGLLK LSDWMNEVEE QRQRKRFPRI * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435741.2 | 0.0 | NF-X1-type zinc finger protein NFXL2 | ||||
Swissprot | Q9FFK8 | 0.0 | NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2 | ||||
TrEMBL | A0A2H5NJS1 | 0.0 | A0A2H5NJS1_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TGY2 | 0.0 | V4TGY2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006486315.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006435741.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10954 | 27 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05660.1 | 0.0 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10030684m |
Entrez Gene | 18044209 |