PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030455m
Common NameCICLE_v10030455mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 395aa    MW: 44052.2 Da    PI: 6.9043
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030455mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30229287259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Ciclev10030455m 229 NDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 287
                      8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-33213289IPR003657WRKY domain
SuperFamilySSF1182909.29E-28220289IPR003657WRKY domain
PROSITE profilePS5081128.988223289IPR003657WRKY domain
SMARTSM007744.3E-37228288IPR003657WRKY domain
PfamPF031062.8E-27229287IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDQTDQESEM EIDLSLKIDA QEDKKPENGD QNQKVHEDRL DKKYSRDKEG EAEELSLQDE  60
NKNKGELSVL QKEMNRMKKE NTLLRKVVEQ TMKDYYELQV KLTAIQQSSQ QMDISHAFLS  120
LKGNEKAFQE PKGAAQILET KNESPPSASS RDDFSKRIST ELGLSLRLQI EREEDKKDNK  180
EVISASFPLL QKKVEQSDQF SGHPSHVALP PNRKARVSVR TRCQAATIND GCQWRKYGQK  240
IAKGNPCPRA YYRCTVAPGC PVRKQVQRCL EDMSILITTY EGTHNHPLPV GATAMASTAS  300
SAASFMLLDS SYNPLSNAGN NPGFFKASDL HYENAQMNSF AYPPSSRHVN PNDPSKGIVL  360
DLAASSYDLH HQQQLLFPVA ASSSSHSSSQ PGFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-23215291176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024948583.10.0probable WRKY transcription factor 9
TrEMBLV4SWA90.0V4SWA9_9ROSI; Uncharacterized protein
STRINGXP_006428226.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-69WRKY DNA-binding protein 9