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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10030327m | ||||||||
Common Name | CICLE_v10030327mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24991.5 Da PI: 6.6835 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.8 | 3.8e-20 | 15 | 59 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 + e+k qvtfskRr g++ KA EL+vLC+aev +i+fs++gk+ Ciclev10030327m 15 KLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKI 59 56899999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.628 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.2E-30 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.28E-34 | 7 | 83 | No hit | No description |
SuperFamily | SSF55455 | 3.92E-26 | 7 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-19 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-22 | 16 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-19 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-19 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
KKKITRGRQK IQIKKLEDKN SLQVTFSKRR SGLFSKAMEL CVLCGAEVGI IVFSPNGKIF 60 LAGHPDFDKI LNRYLDQNHS SLDEVNTIPC VQQHNKEYED AMQELEKEKK RGKMIEEEKK 120 KNKSNGRFWW QEGNIIDDMG IEELEEYLKA MKKLKGKVEM RVNEIMMNGY LAPNMNLENN 180 HRDAFGNINV NVNEDISVSG GIDGGVDFDF GFDEHFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 1e-16 | 7 | 88 | 2 | 83 | MEF2 CHIMERA |
6bz1_B | 1e-16 | 7 | 88 | 2 | 83 | MEF2 CHIMERA |
6bz1_C | 1e-16 | 7 | 88 | 2 | 83 | MEF2 CHIMERA |
6bz1_D | 1e-16 | 7 | 88 | 2 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006422729.2 | 1e-158 | agamous-like MADS-box protein AGL23 | ||||
TrEMBL | V4U9K6 | 1e-157 | V4U9K6_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006422729.1 | 1e-158 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15814 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-34 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10030327m |
Entrez Gene | 18034034 |