PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030228m
Common NameCICLE_v10030228mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 278aa    MW: 32317.5 Da    PI: 8.9309
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030228mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.91.4e-141151343
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     ie +  r +t+ kR+ g+ KKAeE S+LC++  ++ii++++
  Ciclev10030228m 11 IEKEKARMITYQKRKRGLKKKAEEFSTLCGVPTCMIIYGPR 51
                     899999*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.44E-16151IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.297151IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-11164IPR002100Transcription factor, MADS-box
CDDcd001203.47E-18250No hitNo description
PRINTSPR004041.4E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-161155IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRGKLTMQL IEKEKARMIT YQKRKRGLKK KAEEFSTLCG VPTCMIIYGP RLNNRPVDVE  60
IWPKDEKDFM QVVNLYKDKA YSSVRGVKSL SLFDFFADRK RKVDENIAKT RKANYESLFS  120
TDDWDEMINR FSIDQLKQML VVFDEYIDVA TRKLTIMRGQ QQSCIAAADH HRDQALQMIP  180
YNYDLNPVDN PMMMLMMNGG DQMGSSMYNS MQYARCFDPM MGAMINNRLM MMNNPRADLC  240
NNCISTAWVV FIHGFNHSIQ TLSLYPNLQN FQFSIQM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488665.11e-180agamous-like MADS-box protein AGL82
TrEMBLV4SC310.0V4SC31_9ROSI; Uncharacterized protein
STRINGXP_006424842.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16227914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.12e-22AGAMOUS-like 82