PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030106m
Common NameCICLE_v10030106mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 336aa    MW: 36680.6 Da    PI: 7.9254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030106mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13106149855
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       Er RR+++++ f++L +llP++     +K +K++i+ +Av YIk Lq
  Ciclev10030106m 106 TERERRKKMRNMFANLHSLLPQL----PPKADKSSIVDEAVSYIKTLQ 149
                      6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.90E-1397153No hitNo description
PROSITE profilePS5088814.39998148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-1699166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-15102160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9106154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10106149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd021160.00958243299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MALEFLDEGG GGGGEGGLLH EGFFMENPAW APLVSDTTLA PPQPSSSKIP KLNKKQETSQ  60
GSSKKRARGE GGGEVGKDGN LLKGSDDKKA VKVKEGESEH EIHIWTERER RKKMRNMFAN  120
LHSLLPQLPP KADKSSIVDE AVSYIKTLQQ TLRKLQKQKL ERLQGVASFG FEASAAITPQ  180
NKLAIVAHDR QQESSSNLLG ANSTDATNNS SNLLSVSPTY PVIFQTWSSS NVVLNICGDE  240
AHISICSPKK PGMFSTICYL LEKHKIEVIS AQVSSDLTRR MYMIQAHVNG ASDQFSEALP  300
VEEMYKQAAS ELMFWISSCI TPAGNRPEQT CVFRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024035248.10.0transcription factor bHLH95
TrEMBLV4UAF00.0V4UAF0_9ROSI; Uncharacterized protein
STRINGXP_006422989.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-24bHLH family protein