PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030105m
Common NameCICLE_v10030105mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 580aa    MW: 65803.4 Da    PI: 5.2097
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030105mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.3e-12331374755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +Er+RR+++N+++  Lr l+P       +Kl+ a+iL  A+eY+k+Lq
  Ciclev10030105m 331 VAERKRRKKLNDRLYALRALVPII-----TKLDRATILVDAIEYVKQLQ 374
                      68*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-194151IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.01E-10323370No hitNo description
PROSITE profilePS5088815.682324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16326386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-15330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-10331374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16331386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.604467545IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
VQTLMDRLRP LVGLKGWDYC VLWKLSDDQR FIAWIDCCCA GIEGTQNDDG DELHFPVSPF  60
LPCRDVIFPH PRTKSCELLS QLPSSMPLDS GIYAQSLISN QPRWLNFSNS ADLEVMEETL  120
WTRVLIPIMG GLIELFATKE VSEEPHVIDF IIAQCNISME QDPMNMNTSC YLDNASSSVN  180
VHAMALENSD VPYELSVDRI RICSGCTSPV NFLQQFGYSS SSKNVKRHRN DVFFEGSRDD  240
STHQNGIQEM DNASNMNMQF MEPNMGNKEL QQGNYDDLNK DLIKPDQNNN NNNNGRSDSI  300
SDCSDQIDDL EDDVKYRPRR NGKEPQSKNL VAERKRRKKL NDRLYALRAL VPIITKLDRA  360
TILVDAIEYV KQLQKQEKEL KEELEENSDD DGAAKNDDMG ISVNNHNAVK SESLTQNGTN  420
FGPKTEPKQC HMGNGRKQDQ DSENTIDKGQ QMEVQVEVAQ LNGNEFFIKV FCEHKPGGFV  480
RLMEALNSLG LEVTNANVTS RTGLVSNVFN VKKRDNEMVQ ADHVRDSLLE LTRNPAREWI  540
ENVAKASDST VNNGINYHHH EQHLHSHHMS THHHHLHHN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332339ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422575.20.0transcription factor ABORTED MICROSPORES
TrEMBLV4SAF80.0V4SAF8_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006422575.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-130bHLH family protein