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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10030007m | ||||||||
Common Name | CICLE_v10030007mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 26094.7 Da PI: 9.2678 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.8 | 2.2e-14 | 18 | 95 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++p fa+++g++ + tl+ ++gr+ +v l +k ++ +++++GW eFv+ + + g f+vFk++++s+f v++f++ Ciclev10030007m 18 RRIPPFFARKFGHE--LTDAATLTLPNGRQSQVSL--KKDGRNVWFRDGWHEFVEIHSITPGYFLVFKYEKNSRF--QVHIFDT 95 689********966..66689999999********..999999**************************999999..9999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 7.5E-11 | 4 | 96 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.06E-19 | 16 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-19 | 16 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-12 | 18 | 95 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.74E-14 | 19 | 94 | No hit | No description |
PROSITE profile | PS50863 | 10.8 | 20 | 96 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
VNACSSSRVG SDHAESPRRI PPFFARKFGH ELTDAATLTL PNGRQSQVSL KKDGRNVWFR 60 DGWHEFVEIH SITPGYFLVF KYEKNSRFQV HIFDTTACEI KYPCMSEESE NVKDEMVDSE 120 DCVEISKRLF AQKSSKWNCK FGASLENSKV KYKCDPGSKK RKKEELAEKN ESDELDLCDS 180 LGEMGIRVTK RRRISAEGRK RAIRIATSLK LKNPTFLVIL QPSDKNHA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 162 | KKRKK |
2 | 189 | 193 | KRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423118.2 | 1e-169 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | V4RPM5 | 1e-169 | V4RPM5_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006423118.1 | 1e-170 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 6e-27 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10030007m |
Entrez Gene | 18035586 |