PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029958m
Common NameCICLE_v10029958mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 275aa    MW: 30990.4 Da    PI: 4.4026
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029958mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.94.5e-4081081101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      aCaaCk++rr+C++dC+lapyfpa+qp+ f+n+hklFG+sn+l+++k l+ e+r +am+s++yeA++r r Pv+G++gv+ +lq q+ q++ael
  Ciclev10029958m   8 ACAACKYQRRRCSSDCPLAPYFPADQPRLFQNAHKLFGRSNILSIIKPLDAERRAEAMRSIIYEANIRDRYPVHGCLGVVCQLQYQIWQVEAEL 101
                      7********************************************************************************************* PP

           DUF260  95 allkeel 101
                       +++++l
  Ciclev10029958m 102 RAAQAQL 108
                      *999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.6337108IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-388105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MTLKASQACA ACKYQRRRCS SDCPLAPYFP ADQPRLFQNA HKLFGRSNIL SIIKPLDAER  60
RAEAMRSIIY EANIRDRYPV HGCLGVVCQL QYQIWQVEAE LRAAQAQLDM YRQMYYQQQL  120
STVAADDVPS QLELGMALPY IDALSLLHNN NTNDDDDAVA SYSYNSYSSL YMDARDVWVE  180
DTHAANNNNG SSMAFQSQLV ASQPLEIQQE VVRDCDEMHP FFDTVDDRQS YVDSKEAYES  240
SSEESLKDTT QSIEHVGENE LKTAAACFTL TSVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-2621115114LOB family transfactor Ramosa2.1
5ly0_B1e-2621115114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423139.10.0LOB domain-containing protein 27
RefseqXP_006479366.10.0LOB domain-containing protein 27-like
SwissprotQ9STS62e-57LBD27_ARATH; LOB domain-containing protein 27
TrEMBLV4UAT60.0V4UAT6_9ROSI; Uncharacterized protein
STRINGXP_006479366.10.0(Citrus sinensis)
STRINGXP_006423139.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63032746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.16e-50LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]