![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10029882m | ||||||||
Common Name | CICLE_v10029882mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 148aa MW: 17153.7 Da PI: 9.1951 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.6 | 1.7e-11 | 58 | 146 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++s+ +++ +++p kfa+e+ + + +++ed + r+ ++ ++r++ g++vl W + + n L+ gD+++F ++ r++f l+++vf+ Ciclev10029882m 58 ILQSSDITHNAVYVPGKFANEFFSRDVK--SIKIEDDKKREHTLSNNWRRN-GGFVLL--WAKLMRNNSLQKGDICIFDFVPRNDFLLKLSVFS 146 45788888889***********655455..59999*999999999976666.578888..********************99999989888886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-12 | 47 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-12 | 50 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.70E-8 | 53 | 146 | No hit | No description |
PROSITE profile | PS50863 | 8.628 | 54 | 147 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.0E-10 | 57 | 146 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 148 aa Download sequence Send to blast |
MVEKNESDDY DEFDLWASLE EMGMCIARKE RTVTKEESRR AVKIARSLRP KIPSFMVILQ 60 SSDITHNAVY VPGKFANEFF SRDVKSIKIE DDKKREHTLS NNWRRNGGFV LLWAKLMRNN 120 SLQKGDICIF DFVPRNDFLL KLSVFSG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423233.2 | 1e-105 | B3 domain-containing transcription factor VRN1 | ||||
Refseq | XP_015388396.1 | 1e-105 | uncharacterized protein LOC107178107 | ||||
TrEMBL | V4RPX8 | 1e-104 | V4RPX8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006423233.1 | 1e-105 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-14 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10029882m |
Entrez Gene | 18034852 |