 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Ciclev10029805m |
| Common Name | CICLE_v10029805mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
SRS |
| Protein Properties |
Length: 222aa MW: 24575.4 Da PI: 8.4693 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10029805m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 157.9 | 6.6e-49 | 4 | 141 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaa.saaeaaskrkrelkskkqsalsstklssaes 96
g ++CqdCGnqakk+Ca++RCRtCCk rg++C+th+kstW+pa++r +r ++++ ++++ + + +++kr r ++ s
Ciclev10029805m 4 GVTRCQDCGNQAKKNCAYMRCRTCCKRRGYECETHIKSTWIPAYRRHQRYHHQHLVPVHEQHlQLQGHSPKRLR----------------ENPS 81
6689********************************************97766655333322022222222222................3334 PP
DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeee..laYqtavsigGhvfkGiLydqGlee 154
+ l++ ++P+e+ sea frcv+vss+dd+ + laY+t++s+gGh+fkGiLy+qG e+
Ciclev10029805m 82 SPGLQIGNFPAEITSEATFRCVKVSSIDDAIDRttLAYKTSISVGGHIFKGILYYQGCES 141
44788899*********************6554349*********************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 222 aa
Download sequence Send
to blast |
AELGVTRCQD CGNQAKKNCA YMRCRTCCKR RGYECETHIK STWIPAYRRH QRYHHQHLVP 60
VHEQHLQLQG HSPKRLRENP SSPGLQIGNF PAEITSEATF RCVKVSSIDD AIDRTTLAYK 120
TSISVGGHIF KGILYYQGCE SNSNNNVGES SSSEPPPPPQ HQQQPYYPFT VAALTTTTAA 180
TTTTTTALAA ADETPYSSSF TYPFGSYVSA GTQFFPKYPN S*
|
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G51060.1 | 2e-45 | Lateral root primordium (LRP) protein-related |
