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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10029464m | ||||||||
Common Name | CICLE_v10029464mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 160aa MW: 17236.2 Da PI: 9.8038 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 32 | 54 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F++ L H +H Ciclev10029464m 32 FACKTCNKEFPSFQALGGHRASH 54 78**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.78E-9 | 30 | 107 | No hit | No description |
Pfam | PF13912 | 1.1E-12 | 31 | 56 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.868 | 32 | 59 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 32 | 54 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 34 | 54 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.3E-10 | 84 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.162 | 85 | 112 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.5 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MKRDREMAAI DTANCLMLLS KVGETDQGKR VFACKTCNKE FPSFQALGGH RASHKKPKLM 60 TMASSGEDFD QAQMPPASPK KPKTHECSIC GLEFAIGQAL GGHMRRHRAA AAMGAAADGL 120 VTRPLLQLPV LKKSNSCKRA LCLDLNLMPT GDDLKLWVA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.5089 | 0.0 | fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF258893 | 0.0 | KF258893.1 Citrus trifoliata Cys2/His2-type zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424755.1 | 1e-115 | zinc finger protein ZAT12 | ||||
Refseq | XP_006488262.1 | 1e-115 | zinc finger protein ZAT12 | ||||
Swissprot | Q42410 | 2e-39 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | V4SGM1 | 1e-113 | V4SGM1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006488262.1 | 1e-114 | (Citrus sinensis) | ||||
STRING | XP_006424755.1 | 1e-114 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 7e-34 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10029464m |
Entrez Gene | 18034062 |