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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10029384m | ||||||||
Common Name | CICLE_v10029384mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | B3 | ||||||||
Protein Properties | Length: 174aa MW: 20141.2 Da PI: 5.8854 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.3 | 4.4e-16 | 12 | 102 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk+ + +l+ + l++p +f++++g + tl+ ++g +W+v l ++ ++++++ +GW +Fvk + + f+vF++ ++s+f v Ciclev10029384m 12 FFKII--EETLQDKKLRIPVDFVKKFGDE--LCDVATLRVPNGCVWKVGL--TREGRKIWFNDGWHDFVKNHSILKDYFLVFEYAKNSTF--DV 97 67777..78888999********999755..55699**************..********************************999999..99 PP EEE-S CS B3 95 kvfrk 99 +f+k Ciclev10029384m 98 LIFDK 102 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.3E-23 | 6 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.44E-22 | 8 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.03E-17 | 10 | 101 | No hit | No description |
PROSITE profile | PS50863 | 13.324 | 10 | 103 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-13 | 12 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-13 | 12 | 102 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MAESITAEPF RFFKIIEETL QDKKLRIPVD FVKKFGDELC DVATLRVPNG CVWKVGLTRE 60 GRKIWFNDGW HDFVKNHSIL KDYFLVFEYA KNSTFDVLIF DKTACEIEYT CAEPENEKQN 120 DGKKIKPRKV AYEDEYKFVA VLEEMGICIS GAYKFLSVEE RQRIICASRL VSA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423112.1 | 1e-126 | B3 domain-containing protein At4g01580 | ||||
TrEMBL | V4S7E1 | 1e-124 | V4S7E1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006423112.1 | 1e-125 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-28 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10029384m |
Entrez Gene | 18035596 |