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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Ciclev10029275m |
| Common Name | CICLE_v10029274mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
LBD |
| Protein Properties |
Length: 212aa MW: 22808.2 Da PI: 7.4714 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10029275m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 96.9 | 2.1e-30 | 12 | 113 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+C++C+vlr++C+++C+l++ + p++q++++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA r+ +Pv+Gavg++++++++++q
Ciclev10029275m 12 SCNGCRVLRKGCSENCMLRQSIqwigtPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQ 105
6********************************************************************************************* PP
DUF260 90 lkaelall 97
+++e +l
Ciclev10029275m 106 SAVERVLC 113
**998765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 212 aa
Download sequence Send
to blast |
MTCAERKKIN MSCNGCRVLR KGCSENCMLR QSIQWIGTPQ AQANATVFVA KFFGRAGLMS 60
FISAVPETQR PSLFQSLLYE AVGRTVNPVS GAVGLLWTGN WNVCQSAVER VLCGGPLQPL 120
PCSLAPELDD VSESAVNCTN NSPKDVITPP PKRKAVSDFQ DDLHLGLKPC LPEKLRAETP 180
SEESETTTSG TGSDNCCSEV AGEKKLLRLF L*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
