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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10029019m |
| Common Name | CICLE_v10029019mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
MYB_related |
| Protein Properties |
Length: 280aa MW: 31885.8 Da PI: 9.1398 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10029019m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55.2 | 1.7e-17 | 86 | 131 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
Ciclev10029019m 86 RGKMTPQEERLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 131
89********************.*********.************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MDRAGGHTAG ELCAAVWRSA LGFYCESFRF EGGGRQYNRG RLFRRYTNFR RSNSFNYMKY 60
FVVGLNRTGK SCRLRWVNYL HPGLKRGKMT PQEERLVLEL HAKWGNRWSR IARKLPGRTD 120
NEIKNYWRTH MRKKAQERKR AVSSPSSSSS NYSSPSSTVT TVDSMPCPPP QGKASFYDTG 180
GNDETRVAAA LVEEYETSCY SMDEIWKDIE LSEEKIMKQD GNGNVNFACP SPMASPACWG 240
YSSWDSIWKM DEADEESKMM INLPTDDQFI SSWAATLTG*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 7e-18 | 67 | 135 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 2e-17 | 67 | 135 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 2e-17 | 67 | 135 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h8a_C | 1e-17 | 67 | 135 | 60 | 128 | MYB TRANSFORMING PROTEIN |
| 1mse_C | 7e-18 | 67 | 135 | 37 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 7e-18 | 67 | 135 | 37 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
Plant J., 2017. 91(4): p. 741-753
[PMID:28586097] - Imran QM, et al.
Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
Sci Rep, 2018. 8(1): p. 771
[PMID:29335449]
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