PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028932m
Common NameCICLE_v10028932mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 302aa    MW: 32684.8 Da    PI: 4.3651
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028932mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-05276298223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ C+k+F++   L++H +  H
  Ciclev10028932m 276 TCSSCSKTFNSDNALQSHTKAkH 298
                      7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.198275301IPR007087Zinc finger, C2H2
PROSITE patternPS000280277298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEFWGVEVKA GQPLKVKPNF DNIIHLSQAS LGESKKEKGH DSVPLFVKFG DKKLVLGTLI  60
PENIPQLSFD LVFEKEFELS HNWKNGSIYF CGYQTPLPMD SSDEFDMGDS DEEEQEELPS  120
ITAAAENGKA GQKAEKAKAA TPMAIPAAKP AKLIKDVKPK EDGDDESDDE DDSDDEMVDG  180
DDSDEISGED DSDDDDEDDS EDDEDSDEDE KTPKKPEVGK KRPTESATKT PVPAKKAKTP  240
MSDGKKGVHV ATPHPSKGVK TPNAKTQTPK SGGQVTCSSC SKTFNSDNAL QSHTKAKHSA  300
K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.207430.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424344.10.0histone deacetylase HDT2
TrEMBLV4UE570.0V4UE57_9ROSI; Uncharacterized protein
STRINGXP_006424344.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-37histone deacetylase 3