PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10028912m

Common Name

CICLE_v10028912mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 307aa MW: 34047.6 Da PI: 7.8254

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10028912m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.9	1.4e-40	35	96	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Ciclev10028912m 35 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 96 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.7E-34	37	93	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-24	39	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.646	39	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MDASSGQHQE MATHSLESML VCSKAQQERK PRPQPEQALK CPRCDSTNTK FCYYNNYSLS 60 QPRYFCKSCR RYWTKGGTLR NVPVGGGCRK NKRSSSSSSK RSQDQPLMSS NTSPLTNFPP 120 LSYDTNDLSL AFARLQKQNG GQLGFDDQRD FSILGNPVSS HCDILGNPSI SSSTSATTTP 180 AFLDALRSGF LDTHNNFQNL YYGFGNANSM GEVDHHHHHH HHVNHNHDHG ASAEMLMPFG 240 DHQMSATNAT TTAVTVTTMK QELCNGRESE NSKVLWGFPW QLNNADASMN NELNSTWHGL 300 LNSPLM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006424660.1	0.0	dof zinc finger protein DOF2.1
TrEMBL	V4SGD6	0.0	V4SGD6_9ROSI; Uncharacterized protein
STRING	XP_006424660.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6960	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	5e-36	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Ciclev10028912m
Entrez Gene	18034247