PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 308aa MW: 33954.3 Da PI: 9.2072

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10028908m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl Ciclev10028908m 14 KGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	58.6	1.4e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ Ciclev10028908m 67 RGNFTDEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.9E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.723	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.79E-29	13	108	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	5.35E-10	16	61	No hit	No description
PROSITE profile	PS51294	29.017	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	2.62E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0010224	Biological Process	response to UV-B
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:1903086	Biological Process	negative regulation of sinapate ester biosynthetic process
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLIAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TDEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLNRG 120 IDPATHRPLN EPAVPVAAAQ SATTAAPADV AAAAAATTTT ISFSAAAAAK EDIKREKRTI 180 GFVCKNEKQP YHHHNHHRHR QQQQVIVKEE EVTCPDLNLE LRISPPSSAD LHQQQPLIKT 240 GGRSSSLCLA CSLGLQNSKG CSCNNNNNNN TNSMISSSNT SSSSSSTCYD FLGLKSGVLD 300 YRSLEMK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-29	13	116	26	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.309	1e-149	flower\| vegetative tissue

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00479	DAP	Transfer from AT4G38620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006422616.1	0.0	myb-related protein 308
Swissprot	P81393	1e-115	MYB08_ANTMA; Myb-related protein 308
TrEMBL	V4SFR9	0.0	V4SFR9_9ROSI; Uncharacterized protein
STRING	XP_006422616.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-90	myb domain protein 4

Link Out ? help Back to Top
Phytozome	Ciclev10028908m
Entrez Gene	18034301

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]