PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028671m
Common NameCICLE_v10028671mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 376aa    MW: 41144.2 Da    PI: 4.5074
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028671mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.11.5e-15207243135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg ++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Ciclev10028671m 207 CQHCGISEklTPAMRRGPAGPRTLCNACGLMWANKGT 243
                      **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132011.79670105IPR010399Tify domain
SMARTSM009797.7E-470105IPR010399Tify domain
PfamPF062001.7E-874104IPR010399Tify domain
PfamPF062031.6E-14138180IPR010402CCT domain
PROSITE profilePS5101713.066138180IPR010402CCT domain
SMARTSM004015.9E-10201254IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-12203256No hitNo description
Gene3DG3DSA:3.30.50.107.2E-15205248IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.22E-15206250No hitNo description
PfamPF003202.7E-13207243IPR000679Zinc finger, GATA-type
PROSITE patternPS003440207234IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MFAMNPQPLQ ARPYIDTEEH DVAQTPIPIQ NGSKQGDRYD EPEEVEDEAG ASSVNRKSND  60
RGGSSVQSST STRTSELTVA YEGEVYVFPA VTPHKVQALL LLLGECDIPS TVPSSAFAQP  120
QNIMSGGSAS NGSKLSQRIA SLVRFREKRK ERSFEKKIRY SCRKEVAQRM QRKNGQFTSS  180
KATFNIASAN SNPSNGSAPP ESVSRICQHC GISEKLTPAM RRGPAGPRTL CNACGLMWAN  240
KGTLRDLTKG GRNICFEQHE LETSSDIKPA TTEAENSYAN QDEQGSPHET KPAPLDPQNH  300
SMRSNEQYLL ESDDGFACPL PIQEDNSLMN LDDEDLQEAM DELANASGSD FEIPSNFDEQ  360
VDVDDSNLGT DWLDT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423708.10.0GATA transcription factor 19
TrEMBLV4RQZ80.0V4RQZ8_9ROSI; Uncharacterized protein
STRINGXP_006423708.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.18e-50ZIM-like 1