PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028398m
Common NameCICLE_v10028398mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 459aa    MW: 50885.7 Da    PI: 6.6682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028398mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.87.7e-111445132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g W++eEde+l+++++++G g+W+++++  g
  Ciclev10028398m 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAG 45
                     678**************************988 PP
2Myb_DNA-binding41.92.3e-1395137145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++ +E+ l+v++++ lG++ W+ Ia+ ++ gRt++++k+ w+
  Ciclev10028398m  95 RGAFSVQEESLIVELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWN 137
                      89********************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-25692IPR009057Homeodomain-like
PROSITE profilePS5129412.115963IPR017930Myb domain
SuperFamilySSF466893.04E-81246IPR009057Homeodomain-like
SMARTSM007173.7E-81391IPR001005SANT/Myb domain
PfamPF002493.3E-81445IPR001005SANT/Myb domain
CDDcd001672.10E-81789No hitNo description
SuperFamilySSF466891.42E-1975149IPR009057Homeodomain-like
SuperFamilySSF466893.04E-87693IPR009057Homeodomain-like
PROSITE profilePS5129423.11190144IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2393144IPR009057Homeodomain-like
SMARTSM007171.4E-1194142IPR001005SANT/Myb domain
PfamPF002496.1E-1295137IPR001005SANT/Myb domain
CDDcd001673.61E-897137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGKIYLE NNNHACSVIL  60
MFNAFNTMFL LAGLQRCGKS CRLRWINYLR PDLKRGAFSV QEESLIVELH AVLGNRWSQI  120
AAQLPGRTDN EIKNLWNSSI KKKLRQRGID PNTHKPLSEV ENDKEQQLTV INKNSDKASA  180
ESSKDLAAEI MHPLEVSSSS EINTNNNNNA SMLNLVDKFA AAASNNESST TSCRPDLMGY  240
FPFQKLNYGP NIGLSVNTNT SSLFFNPNST SSEMISEFNS SIIPSISASV FQTPIRVKPS  300
ISLPSENPSV GTSDINGIQN WEPSSFSNNC STSNGSTTSI ELQSSSSFFE GNVFSWGITA  360
DCGKSNDQEA QIRALEGDQE DIKWSEYLNT PFFLGSTIQN HQTSQSMYSD VKPEAHFISE  420
GSNTTTWIQN QHQQASQTTP AMYTKDLQRL SVAFGQTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24121445108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024035251.10.0transcription factor MYB61
TrEMBLV4SEH50.0V4SEH5_9ROSI; Uncharacterized protein
STRINGXP_006423960.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-117myb domain protein 61