PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028259m
Common NameCICLE_v10028259mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 502aa    MW: 54140.5 Da    PI: 6.4352
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028259mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-17162211155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Ciclev10028259m 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211
                      78*******************......55************************997 PP
2AP241.33.9e-13254304155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Ciclev10028259m 254 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAMKCNG 304
                      89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-9162211IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-15162220IPR016177DNA-binding domain
SMARTSM003804.5E-31163225IPR001471AP2/ERF domain
CDDcd000183.42E-11163218No hitNo description
PROSITE profilePS5103217.794163219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-17163219IPR001471AP2/ERF domain
PfamPF008479.2E-9254304IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-16254313IPR016177DNA-binding domain
CDDcd000186.43E-25254314No hitNo description
SMARTSM003801.3E-31255318IPR001471AP2/ERF domain
PROSITE profilePS5103215.514255312IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15255312IPR001471AP2/ERF domain
PRINTSPR003676.8E-6256267IPR001471AP2/ERF domain
PRINTSPR003676.8E-6294314IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MLDLNLNVMS IESTQQNSDE ERVGSVVLVE KSPEGSSGTS NSSVVNADAS SNVGDDESCS  60
TRAVAGDNSV FTFNFDILKV GGDSGNVRNE NVEQNNAVSR KEFAFFPASG GGENGGGQSS  120
GSWIDLSFDK QQQQEGGGEV RVTQQSSPVV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI  180
WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL ADYEDDMKQM KNLTKEEFVH  240
ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAM  300
KCNGREAVTN FEPSTYEGEM ITEGSNEGGD HNLDLNLGIS SSFGSGPKAN EGHSQFLSGP  360
YGAHGGRTSR TENSTTAAVG DSASKGLMRT SEHPIFWNGA YPGLLTTEEK ATEKRIELGP  420
PQGLPNWAWQ MHGQVSGTPA SLLSSAASSG FPFSAAPPSA AVLSSKPLNP SDVNLCFTST  480
NTTAPNTSQF YYQMKLPQAP P*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424678.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK031e-120RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLV4RTF30.0V4RTF3_9ROSI; Uncharacterized protein
STRINGXP_006424678.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-123related to AP2.7