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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10028259m |
Common Name | CICLE_v10028259mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
AP2 |
Protein Properties |
Length: 502aa MW: 54140.5 Da PI: 6.4352 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10028259m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 53.4 | 6.4e-17 | 162 | 211 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Ciclev10028259m 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211
78*******************......55************************997 PP
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2 | AP2 | 41.3 | 3.9e-13 | 254 | 304 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g
Ciclev10028259m 254 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAMKCNG 304
89********.7******5553..2.26**********99**********99776 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 502 aa
Download sequence Send
to blast |
MLDLNLNVMS IESTQQNSDE ERVGSVVLVE KSPEGSSGTS NSSVVNADAS SNVGDDESCS 60 TRAVAGDNSV FTFNFDILKV GGDSGNVRNE NVEQNNAVSR KEFAFFPASG GGENGGGQSS 120 GSWIDLSFDK QQQQEGGGEV RVTQQSSPVV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI 180 WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL ADYEDDMKQM KNLTKEEFVH 240 ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAM 300 KCNGREAVTN FEPSTYEGEM ITEGSNEGGD HNLDLNLGIS SSFGSGPKAN EGHSQFLSGP 360 YGAHGGRTSR TENSTTAAVG DSASKGLMRT SEHPIFWNGA YPGLLTTEEK ATEKRIELGP 420 PQGLPNWAWQ MHGQVSGTPA SLLSSAASSG FPFSAAPPSA AVLSSKPLNP SDVNLCFTST 480 NTTAPNTSQF YYQMKLPQAP P*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |