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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10028062m | ||||||||
Common Name | CICLE_v10028062mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bZIP | ||||||||
Protein Properties | Length: 598aa MW: 64930.3 Da PI: 6.8117 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.6 | 3.7e-10 | 434 | 491 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A rs +RK +i eLe kv++L++e ++L +l l+ + l+++ Ciclev10028062m 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 491 9********************************************9998877666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.2E-18 | 430 | 494 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.737 | 432 | 495 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 9.7E-11 | 434 | 490 | No hit | No description |
SuperFamily | SSF57959 | 3.45E-11 | 434 | 485 | No hit | No description |
Pfam | PF00170 | 8.6E-9 | 434 | 488 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 4.25E-24 | 435 | 484 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 598 aa Download sequence Send to blast |
MGGDSDEGNG GNTDMMQRIQ SSFGTSSSSI PKQQTLLSAN QLDLPQLNQN QLRARHFSQF 60 ATNFGGDSSK RVGIPPSHPN QIPPISPYSS IPVSRPGNQQ MGSQNYSPGP THSRSLSQPS 120 LFFSLDSLPP LSPSPFRDSP STSMSDQVST DVSMEDRDGN SHSLLPPSPF NRGNASRIGE 180 SLPPRNKHRR SNSDIPFGFS TVMQSSSPLI SPRFAGGLDK AVSGRENPGV AKPAQLVKKE 240 SSWERGGESN GEGMGERKSE GEVVDDLFSA YMNLENIDAL NSSGTDDKNG NENREDLDSR 300 ASGTKTNGGD SSDNEAESSV NESGNSLQRA GMNSSAEKRE GIKRTAGGDV ASTTRHYRSV 360 SMDSFMGKLN FGDESPKLPP SPGTRPGQLS PSNSIDANSP AFSLEFGNGE FSGAELKKIM 420 ANEKLAEIAL TDPKRAKRIL ANRQSAARSK ERKMRYISEL EHKVQTLQTE ATTLSAQLTL 480 LQRDSVGLTN QNNELKFRLQ AMEQQAQLRD ALNEALTAEV RRLKVATQEM ASESDPSKGM 540 ANQQLPMNSQ MFQVHQQQPS QLNIHQLQHQ HQQSHSQVNF QQQQQNCGTA TKPESNQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423515.1 | 0.0 | transcription factor RF2a | ||||
TrEMBL | V4SD70 | 0.0 | V4SD70_9ROSI; Uncharacterized protein | ||||
STRING | XP_006423515.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4224 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 1e-148 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10028062m |
Entrez Gene | 18035253 |