PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027952m
Common NameCICLE_v10027952mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 676aa    MW: 74151.1 Da    PI: 5.9417
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027952mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.7e-094204571954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Ciclev10027952m 420 FEHflHPYPKDTDKIMLARQTGLTRSQVSNWFINARVR 457
                      664459******************************88 PP
2BELL132.91e-42282353172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi
  Ciclev10027952m 282 ERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAICGQI 353
                      79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.0E-64205351IPR006563POX domain
PfamPF075269.4E-53211349IPR006563POX domain
PROSITE profilePS5007112.082398461IPR001356Homeobox domain
SMARTSM003893.2E-9401465IPR001356Homeobox domain
CDDcd000867.79E-13401462No hitNo description
SuperFamilySSF466892.61E-17402468IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-29404467IPR009057Homeodomain-like
PfamPF059204.6E-18418457IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MATYFTSSSN QREGTPMIYL RESLPSSYPE APVLPGNVMM YMNSGSYSDA LAGSSQQQNN  60
CIDIQSVEAS HSTPQQQEMF SNLGGTRIVE HQFNAWRDSR NEMLVMHPMG GSTGMLHGGQ  120
NLQGQGLSLS LGTQIPPGIQ MPSIPYRNPS AGFVSFLGSN SSISADNGRN GPSTDEQSRN  180
ADYLPAGTSG GNQDGKGDLS PYGMPSIARA IPSSKYLKAA QQLLDEVVNV RKALRQPDGE  240
KSQSTHEQRM NNSKDGDGGS KDVTSNTQES PSNSPNELSH AERQELQNKL TKLLSMLDEV  300
DRRYKQYYHQ MQIVVSSFDV IAGCGAAKPY TALALQTISR HFRCLRDAIC GQIRATRKSL  360
GEQENSENSK GVGITRLRYV DQQLRQQRAL QHLGMMQQHA WRPQRGLPES SVSILRAWLF  420
EHFLHPYPKD TDKIMLARQT GLTRSQVSNW FINARVRLWK PMVEEMYKEE FADAEMDSNS  480
SSENAAKATR GDLRASEDRE EDLQQSGSST AAERCSTGQL TESKSNRIPD IEMAGASFQN  540
ETSGEAETEY GLLKLREEQR PGVDDCNLFP DAMVPSSGGN DRFMAAAAAY HHMSELGRFG  600
SGSGVSLTLG LQNCEGGSLP MAGATHQSFV AMRDDEMYHA AASSVGTDTV DYDCINNGNR  660
QPRFSSSHLL HDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16407464158Homeobox protein Meis1
4xrs_B2e-16407464158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.213560.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423388.10.0BEL1-like homeodomain protein 6
TrEMBLV4RQC20.0V4RQC2_9ROSI; Uncharacterized protein
STRINGXP_006423388.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-134BEL1-like homeodomain 6