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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10027765m | ||||||||
Common Name | CICLE_v10027765mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Nin-like | ||||||||
Protein Properties | Length: 946aa MW: 104541 Da PI: 6.2191 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.6 | 5.9e-29 | 625 | 675 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Ciclev10027765m 625 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 675 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.507 | 614 | 695 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 9.9E-25 | 627 | 675 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 6.13E-25 | 842 | 931 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.5E-25 | 845 | 928 | No hit | No description |
SMART | SM00666 | 1.4E-30 | 847 | 930 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.0E-19 | 847 | 929 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 27.775 | 847 | 930 | IPR000270 | PB1 domain |
CDD | cd06407 | 3.53E-46 | 848 | 928 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 946 aa Download sequence Send to blast |
MDDGNFTPNP SFGDFPGTAM DLDFMDELLF DGCWLETTDA LDFLQPGPSS SGPADDTSQY 60 LPYSEGTTGH LSMNVNPQQQ VYQEETKNKF TENPSLVYPK IEEIQDTRTQ DHQGFDPATS 120 SGQSGSFLAQ GNELGRRWWI GPRENTGHSS SVKDRLMQAI IYLKDYIKDG KALVQIWVPI 180 NSGGKQLLTT DDQPYSLDPN SKSLESYRNV STTYHFAADE DSKEFVGLPG RVFREQSPEW 240 TPDVLFFRSE EYPRVNHAQQ YDVHGSLALP VFERGSGACL GVVEVVTTSR KINYRLDLEN 300 VCKALEAVDL RSSGNFSTSC VKARNELYHA AMPEIAEVLR SVCKTHKLPL ALTWAPCVQG 360 RKVECQQSDE NFPHCFLTVD SACFVANENL SGFFVACSEQ QLLQGQGIVG KAFSLSKQCF 420 TADITAFSKS NYPLSHLARM FGLRAAVAIP LRSITTGVVE FILEFFLPRE CQDIEEQKQM 480 VKSLSVAMQQ VCQSLRLAME KELEVVILPV GEMAVTSDGS SPSKETSQEQ SSWISHMIEA 540 QQKGKGVSVS WDHQEEPKEE FKMTTHWDDA RAESFHKEVF PGFGQFQHNS GAKSSVEGGG 600 DSSSLGGHLS VGSRKAGEKR RTKTEKTISL QVLRQYFAGS LKDAAKSIGV CPTTLKRICR 660 QHGITRWPSR KIKKVGHSLR KLQLVIDSVQ GAEGAIQIGS FYTTFPDLNS PNFSGSGTFS 720 SMKINDHPEP SNAPPANGLF STGAAVSKSP SSSCSQSSGS SNCCSTGAKL NTTNINALSS 780 VDTKMVEDPG GMLKRARSDA ELHALNQEEP KLLARSRSHK ILGEHVSLES LPPLPKCGNH 840 NLRDGSTFRV KASFGEEKIR FSLQPNWGFK DLQQEIARRF NIEDFNEIDL KYLDDDHEWV 900 LLTCDADLEE CIDIYKSSQS HTIKISLHRA SHLKLVKVAH NNAPS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KX056268 | 0.0 | KX056268.1 Citrus trifoliata transcription factor NLP2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006422434.1 | 0.0 | protein NLP2 | ||||
Refseq | XP_024035066.1 | 0.0 | protein NLP2 | ||||
Swissprot | Q7X9B9 | 0.0 | NLP2_ARATH; Protein NLP2 | ||||
TrEMBL | V4U8W2 | 0.0 | V4U8W2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006422434.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1998 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10027765m |
Entrez Gene | 18034232 |