PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027584m
Common NameCICLE_v10027584mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 186aa    MW: 21591.3 Da    PI: 10.861
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027584mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-1078135562
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      ++ rr+++NRe+ArrsR RK++ +e+L++    L  eN++L ++l     ++++++++
  Ciclev10027584m  78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTD 135
                      5789**************************************9998777777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.7E-972125No hitNo description
SMARTSM003384.9E-1274138IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.62276122IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.97E-1078128No hitNo description
PfamPF001707.3E-878134IPR004827Basic-leucine zipper domain
CDDcd147022.20E-1879130No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MLSACPAIFS SEMMFGNPFP DFESEFTPWD LPDPFPAPNQ SPIPAVSSSG SDEPNQIQTN  60
SNSGSDEPRQ TVSVIDERKR RRMISNRESA RRSRMRKQKH LENLRNQLNR LRMENRELSN  120
RLRFALHHCQ RVRTDNDRLR SEHTILRRRL SEIRQILLYR QLQQVTSAWP CNSAVTNEQT  180
SSLIT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17781RKRRR
27798RKRRRMISNRESARRSRMRKQK
39097RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024036372.11e-133basic leucine zipper 4
TrEMBLV4RWX21e-132V4RWX2_9ROSI; Uncharacterized protein
STRINGXP_006426133.11e-132(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.13e-23basic leucine-zipper 5