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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10027413m |
Common Name | CICLE_v10027413mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
GRAS |
Protein Properties |
Length: 549aa MW: 60593.4 Da PI: 5.9787 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10027413m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 229.8 | 1.3e-70 | 171 | 540 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkf 93
++lL cA a+++g+l+++q+lL l+elasp+gd+++Rlaa+ ++AL ++l++ s+s++ + p + s+++ ++l f++ sP++ f
Ciclev10027413m 171 EQLLNPCAAAITAGNLTRVQHLLYVLHELASPTGDANHRLAAHGLRALTHHLSSlsSSSTTTTSTGPLTFSSTEPRFFQKSLLNFYDKSPWFAF 264
689**************************************************9522233333334444444444444444444********** PP
GRAS 94 shltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeel 172
+ +aN+ Il+ ++++ + +Hi+D+++s+G+QWp+Ll+aL+ R+ ++pp +R+T +++ +++ ++ +L fA+++
Ciclev10027413m 265 PNNIANSSILQILAQDrhnqvQNLHILDIGVSHGVQWPTLLEALTRRSgGPPPLVRLTIIAPTAENdqneetpfsVGPPGDNYSLQLLGFAKSM 358
*************99878666777************************55666*******9977767666665555556688999********* PP
GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealey 263
++++++n l ++ l+dl+ ++ ++ p+E+l+V+ +++lh+l +s+++er+e+L+++ksl+Pk v+++e+++d+ n ++F+++f++ +ey
Ciclev10027413m 359 NINLQINRLESHPLQDLSAQMVSTYPEETLIVCTQFRLHHLN---HSTPDERTEFLRVLKSLEPKGVILSENNMDCscgNCGDFATGFARRVEY 449
*********999*****************************8...77778889*******************9776547888************ PP
GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
+ ++ds++a l k r+ + ga e +e + kW +r++ +GF ++e+a + ++llrk++ s++ rv+e++g
Ciclev10027413m 450 LWRFLDSTSAAL--------KAGRA----------KKGGA---EMNEGKDKWCDRMRGVGFVGEVFGEDAIDGGRALLRKYDnSWETRVDERDG 522
********9996........33333..........22333...4677888********************************99********** PP
GRAS 357 slvlgWkdrpLvsvSaWr 374
++ l Wk++p+ ++S W+
Ciclev10027413m 523 CIELWWKGQPVSFCSLWK 540
*****************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0042446 | Biological Process | hormone biosynthetic process |
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
Protein Sequence Length: 549 aa
Download sequence Send
to blast |
MTIIEEPEPN PTADHILDWL EESVSFLPSF LDDPYNANGI DDYQWWNQGQ DMAPEQLIGN 60 TGASSAAAPV NNTEATVNVS TISVRPTDSV VPGPPAPADS SKKRRNADDP RTRSSQSHHQ 120 RKNQGRRISE TEEGNEEGVI VKRSVGNKKN TNKSTGNNGN NGNSKEGRWA EQLLNPCAAA 180 ITAGNLTRVQ HLLYVLHELA SPTGDANHRL AAHGLRALTH HLSSLSSSST TTTSTGPLTF 240 SSTEPRFFQK SLLNFYDKSP WFAFPNNIAN SSILQILAQD RHNQVQNLHI LDIGVSHGVQ 300 WPTLLEALTR RSGGPPPLVR LTIIAPTAEN DQNEETPFSV GPPGDNYSLQ LLGFAKSMNI 360 NLQINRLESH PLQDLSAQMV STYPEETLIV CTQFRLHHLN HSTPDERTEF LRVLKSLEPK 420 GVILSENNMD CSCGNCGDFA TGFARRVEYL WRFLDSTSAA LKAGRAKKGG AEMNEGKDKW 480 CDRMRGVGFV GEVFGEDAID GGRALLRKYD NSWETRVDER DGCIELWWKG QPVSFCSLWK 540 LDVKVEDS*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in epidermal and cortical root cells. {ECO:0000269|PubMed:15961669}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |