PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027306m
Common NameCICLE_v10027306mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 294aa    MW: 31996.4 Da    PI: 6.6036
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027306mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.11.8e-16215251135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Ciclev10027306m 215 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 251
                      *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.34771106IPR010399Tify domain
SMARTSM009791.3E-1071106IPR010399Tify domain
PfamPF062002.2E-1277105IPR010399Tify domain
PfamPF062031.6E-15139181IPR010402CCT domain
PROSITE profilePS5101713.106139181IPR010402CCT domain
SMARTSM004012.7E-14209262IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.183209266IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-13210272No hitNo description
Gene3DG3DSA:3.30.50.105.8E-16213256IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.73E-15214257No hitNo description
PROSITE patternPS003440215242IPR000679Zinc finger, GATA-type
PfamPF003201.9E-14215251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDHGSNPQMQ MSDEQHSIHH VNYVPEHELH HISNGDVMDD EHDEGNGVGE SEAMEGDAPS  60
DPGSLSDNRA IAEIGDQLTL SFQGQVYVFD SVSPEKVQAV LLLLGGREVP STTPAIPIAN  120
NQNNRGLPGT PQRLSVPQRL ASLIRFREKR KERNFEKKIR YTVRKEVALR MQRNKGQFTS  180
AKSNNEDSAS AVSSWGSNQS WAGDVNGSQN QDIVCRHCGI SEKSTPMMRR GPEGPRTLCN  240
ACGLMWANKG TLRDLSKAAP QAGQTSSLNK NEENGTLKAE QVIRAAGNIN GST*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006427761.10.0GATA transcription factor 28 isoform X1
SwissprotQ8H1G01e-130GAT28_ARATH; GATA transcription factor 28
TrEMBLV4SUY90.0V4SUY9_9ROSI; Uncharacterized protein
STRINGXP_006427761.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-117ZIM-LIKE 2