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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Ciclev10027270m |
| Common Name | CICLE_v10027270mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
WOX |
| Protein Properties |
Length: 292aa MW: 31853.6 Da PI: 6.8676 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10027270m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.5 | 5.5e-19 | 31 | 91 | 2 | 56 |
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
++R+t+t++q+++L+el+++ r p+ae++++++++l +++ ++V++WFqN +a+e+
Ciclev10027270m 31 CPRWTPTTDQIRILKELYYNngVRSPTAEQIQKISARLrqygKIEGKNVFYWFQNYKARER 91
58****************98678************************************98 PP
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| 2 | Wus_type_Homeobox | 107.3 | 9.6e-35 | 30 | 94 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
+++RWtPt++Qi+iL+ely+ +G+r+P++e+iq+i+a+L++yGkie+kNVfyWFQN kaRer k+
Ciclev10027270m 30 TCPRWTPTTDQIRILKELYYnNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKK 94
579***************9779****************************************885 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 292 aa
Download sequence Send
to blast |
MEPQQQQNQH QGNGACGGSG KGNNCHCRPT CPRWTPTTDQ IRILKELYYN NGVRSPTAEQ 60
IQKISARLRQ YGKIEGKNVF YWFQNYKARE RLKKKIEGSS TSAADNLPMH QRPAAATNWK 120
PEDFANKSRS QSITSAGVSA TLPSYSVYTG GQMGDHGYGP VTMEKNFRDC SISSTGSSVV 180
GGSRSQNYGW VGIDPHTSSY IFFGQKNSAD GNQGNDKEDE EDEENGHPGI ETLPLFPMHG 240
EDSINDYWNS KPNSSSYYSG WYGSNDGSST SSSASLELSL NSYTSGSSGS I*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. {ECO:0000269|PubMed:12208843}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU032533 | 0.0 | EU032533.1 Citrus sinensis WUSCHEL-like protein mRNA, complete cds. |
