PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

CPP

Protein Properties

Length: 776aa MW: 86091.2 Da PI: 5.2839

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10027242m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	52.5	9.5e-17	543	581	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkkskClkkYCeCf+a++ Cs+ C+Ce+C+N+ Ciclev10027242m 543 RHKRGCNCKKSKCLKKYCECFQANVGCSDGCRCEGCSNS 581 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	24.704	459	583	IPR005172	CRC domain
SMART	SM01114	1.1E-17	543	584	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	4.6E-12	545	581	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence Send to blast
MESPEGDRIK ATSLSTPGSS PAVQESPVFN FISNLSPINS VKAARYTQRF FETQFPTPPP 60 VFRTPRLDLQ RETSFLKSND ADAASRDYGD CGNRMSTVLV PCMQKELQSC SPSGCVDDYL 120 TDPVEVEGCS NSNELCVQPA KNVSKLSSSG FNSPTITSPK VNGANDRNSE DFMHMLPDQA 180 EQDPLRSLAL FETAIEQRDA ESFDGSHKLT PTEKADQNVM LQNTGTQHNG QDGRSQSPKN 240 LQNVEADKNS SENVGPVSTG LLKSRSRIIH RRIIEYDSKI SHSSHNVTQE SDNSTLPASF 300 RDWESLIPSD IEPREVSSGR EATSSSQNVA SRLSFCQSDF VRSSQNEESL PLIGPLPPGF 360 SLHLSSMAEL MPISSDLMPT GRIHDYMKND QLDDQAVVGA SLVISQYTDS MKQISDSLQM 420 TLSEQQAAPC EGMMLTSEIE ELNQVNKSII SDGEIFRVQH DLIEAFFSSF NVDPVSNAGI 480 YCIDSCACES CFNKPEYEET VTDTRQQIQS RNPLAFAPKI VGHADSAANV VEDGNLTTPA 540 SARHKRGCNC KKSKCLKKYC ECFQANVGCS DGCRCEGCSN SFGRKTESKY QKVQRWENQS 600 HVKLDAAANV TDSTKTRTIK PFSARWEDLP DMSHLTPLSY SYPEAEASSV SPSMRDFQNV 660 RRTHLHHESS FQSVNPHWQS PMSSMPQFHE DFAEHNRRSS YSKVHDTTKE DNMPEIQKDT 720 STPSNASKAD VPNRKQISPP QFQSQELRSS STQGGLESDR KFSWKNVPSF PPLTPY

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence Send to blast

MESPEGDRIK ATSLSTPGSS PAVQESPVFN FISNLSPINS VKAARYTQRF FETQFPTPPP  60
VFRTPRLDLQ RETSFLKSND ADAASRDYGD CGNRMSTVLV PCMQKELQSC SPSGCVDDYL  120
TDPVEVEGCS NSNELCVQPA KNVSKLSSSG FNSPTITSPK VNGANDRNSE DFMHMLPDQA  180
EQDPLRSLAL FETAIEQRDA ESFDGSHKLT PTEKADQNVM LQNTGTQHNG QDGRSQSPKN  240
LQNVEADKNS SENVGPVSTG LLKSRSRIIH RRIIEYDSKI SHSSHNVTQE SDNSTLPASF  300
RDWESLIPSD IEPREVSSGR EATSSSQNVA SRLSFCQSDF VRSSQNEESL PLIGPLPPGF  360
SLHLSSMAEL MPISSDLMPT GRIHDYMKND QLDDQAVVGA SLVISQYTDS MKQISDSLQM  420
TLSEQQAAPC EGMMLTSEIE ELNQVNKSII SDGEIFRVQH DLIEAFFSSF NVDPVSNAGI  480
YCIDSCACES CFNKPEYEET VTDTRQQIQS RNPLAFAPKI VGHADSAANV VEDGNLTTPA  540
SARHKRGCNC KKSKCLKKYC ECFQANVGCS DGCRCEGCSN SFGRKTESKY QKVQRWENQS  600
HVKLDAAANV TDSTKTRTIK PFSARWEDLP DMSHLTPLSY SYPEAEASSV SPSMRDFQNV  660
RRTHLHHESS FQSVNPHWQS PMSSMPQFHE DFAEHNRRSS YSKVHDTTKE DNMPEIQKDT  720
STPSNASKAD VPNRKQISPP QFQSQELRSS STQGGLESDR KFSWKNVPSF PPLTPY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	5e-12	496	580	48	120	Protein lin-54 homolog
5fd3_B	5e-12	496	580	48	120	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024037152.1	0.0	protein tesmin/TSO1-like CXC 3 isoform X1
TrEMBL	V4SNE4	0.0	V4SNE4_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006427190.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15696	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	3e-49	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Ciclev10027242m
Entrez Gene	18036327