PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027201m
Common NameCICLE_v10027201mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 380aa    MW: 42172.5 Da    PI: 6.6693
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027201mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.9e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++v+ +G g+W++++++ g+ R++k+c++rw +yl
  Ciclev10027201m 14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding48.81.6e-1567109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++++E  l+++++  lG++ W+ Iar+++ gRt++++k++w+
  Ciclev10027201m  67 RGSFSPQEAALIIELHSILGNR-WAQIARHLP-GRTDNEVKNFWN 109
                      899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-28664IPR009057Homeodomain-like
PROSITE profilePS5129425.711965IPR017930Myb domain
SuperFamilySSF466891.24E-2911108IPR009057Homeodomain-like
SMARTSM007171.8E-141363IPR001005SANT/Myb domain
PfamPF002497.1E-171461IPR001005SANT/Myb domain
CDDcd001676.74E-131761No hitNo description
Gene3DG3DSA:1.10.10.609.1E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129420.35366116IPR017930Myb domain
SMARTSM007171.9E-1566114IPR001005SANT/Myb domain
PfamPF002497.8E-1467110IPR001005SANT/Myb domain
CDDcd001674.61E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLINYVT TYGHGCWSSV PKHAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIARHLPGRT DNEVKNFWNS SIKKKLMSHE  120
IVPALASFPA DFHNSTCPEE VGFFSLNTNP NLILNSHQQD HQFHLPSPPP PMFHNNFDQA  180
EFKLNLSNYN VASIHFPPPP TIIPSSSTSS SSLDWSLPHH LQPQVHLDPN PLENQIFSHI  240
EPVALPHYYD DIIGDHDNKL NTTDPSIVTM PYDQNPFLVP TMPKLCEILE GTVCNLPSSS  300
ASLEGVDPIA KLSCGTTFSS GSYLYHVPAD PMEYTDAIMS TLQPLSTSPS SSLSSLSPLS  360
RGTYATTTNP NFPSTSWGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in anthers early during endothecial development, with maximal expression during pollen mitosis I and bicellular stages. {ECO:0000269|PubMed:17329564}.
UniprotTISSUE SPECIFICITY: Highly expressed in flowers. {ECO:0000269|PubMed:12753590}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346558e-35KM034655.1 Jatropha curcas clone JcMYB035 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426579.10.0transcription factor MYB26
RefseqXP_024035819.10.0transcription factor MYB26
SwissprotQ9SPG32e-79MYB26_ARATH; Transcription factor MYB26
TrEMBLV4UKC50.0V4UKC5_9ROSI; Uncharacterized protein
STRINGXP_006426579.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128031930
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.21e-84myb domain protein 26
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  3. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]