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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Ciclev10027138m |
| Common Name | CICLE_v10027138mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
GATA |
| Protein Properties |
Length: 379aa MW: 42341.3 Da PI: 7.7344 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10027138m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 51.8 | 1.1e-16 | 303 | 337 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +C + kTp+WR gp g+ktLCnaCG++y++ +l
Ciclev10027138m 303 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 337
99*****************************9885 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MGQSKDPRNF LKKFILYFLS FSFYPNRTNF ITQLKFLQNF AIFTLQTFQT SHILSQNRSI 60
SRQFSLLTNS DTFLMETPEF YIGGYFNAAS TNNFSSEKRV VVAADQKPGE NFNFTVEDLL 120
DFSNDDAIMN DGGFFENVAA NSTDSSTVTS NSAVSGGENN FPANFSGCRS SNSFADSQFC 180
GELCVPYDDL AELEWLSNFV EDSFSMDQTL QKSDLEFLSG SKSLTPESSS SSTRLEPVSP 240
KASNPVFLPE TPLPGKARSK RPRAAPCDWS TRLLHVSPKG PSVERESPNP LMHTESGDSV 300
RKCLHCASEK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPAASPTFV SAKHSNSHRK 360
VMELRRQKEM QRAPQQQFL
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
