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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10027092m | ||||||||
Common Name | CICLE_v10027092mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 27289 Da PI: 10.6077 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.8 | 1.6e-12 | 60 | 122 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC.............TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas..........kapskKlsKaeiLekAveYIksLq 55 ++h+e+ErrRR riN+ +++Lr++lP+++ ++ ++Ka++L k+++ +++Lq Ciclev10027092m 60 KKHSEAERRRRLRINDQYDNLRKILPNLVkvnnastkllVIVKQQVDKASVLAKTIKTVRELQ 122 68*************************999*******99888888***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.202 | 57 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-12 | 59 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-13 | 60 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.51E-7 | 60 | 126 | No hit | No description |
Pfam | PF00010 | 5.1E-10 | 60 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-9 | 63 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 7.55E-5 | 158 | 221 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.4E-5 | 159 | 220 | No hit | No description |
CDD | cd04873 | 2.50E-4 | 161 | 206 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MVLLQQLERG VKPVQSYYNS MTYLKQLSLT QGSISSNIIC YPSLISKPIS KVEAKELAAK 60 KHSEAERRRR LRINDQYDNL RKILPNLVKV NNASTKLLVI VKQQVDKASV LAKTIKTVRE 120 LQRTVREQKA LCQVHEECVF PSEANELSLR NCNRDRGMLK VTLSCEDQPE LMSDLSRALR 180 SVKGRLVRAE MVPVGGRIKC VLWVQGFKGN EGMVMLKRAL NLVIDRPVSP GNSSKLRFYH 240 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006426282.1 | 1e-176 | transcription factor bHLH131 | ||||
TrEMBL | V4SG06 | 1e-174 | V4SG06_9ROSI; Uncharacterized protein | ||||
STRING | XP_006426282.1 | 1e-175 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13939 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 2e-45 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10027092m |
Entrez Gene | 18037106 |