PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026981m
Common NameCICLE_v10026981mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 125aa    MW: 14522.4 Da    PI: 10.0074
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026981mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.22.1e-1289742128
              NAM  42 vePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ePw++ k++ +    + +++yfF++ +kk+ +g+     + + +W+     k+v+s+ +++++  kk + + k ++p+  +  W+mhey+l
  Ciclev10026981m   8 KEPWQIWKQFGGldleDGEDLYFFTRLKKKSVNGSMIDSRVGTRTWQGEDAGKAVVSRnSRKKIDSKKRFQYEKDKSPH--NGCWIMHEYSL 97 
                      599*99753333333356689************998887778889****999999998667789********9777766..99*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.1841119IPR003441NAC domain
SuperFamilySSF1019419.02E-147118IPR003441NAC domain
PfamPF023657.6E-71097IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
TENLYGSKEP WQIWKQFGGL DLEDGEDLYF FTRLKKKSVN GSMIDSRVGT RTWQGEDAGK  60
AVVSRNSRKK IDSKKRFQYE KDKSPHNGCW IMHEYSLNPS LLPQNLRSND LVLYRIRKNG  120
EPVVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015386237.15e-72NAC domain-containing protein 83-like
RefseqXP_015386958.11e-71NAC domain containing protein 50-like
TrEMBLV4RXX23e-88V4RXX2_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006426563.16e-89(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.11e-07vascular related NAC-domain protein 7