PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10026848m | ||||||||
Common Name | CICLE_v10026848mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 93aa MW: 10681.9 Da PI: 5.1852 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.2 | 3.4e-07 | 15 | 60 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+ +l+ +a + + ++ +W Ia+ +g g +++++k r+ + Ciclev10026848m 15 SWTAKKNKLFENALAIYDKDtpdRWQIIAKIVG-GTSDEEVKRRYEM 60 79*******************************.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.319 | 8 | 62 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.5E-6 | 12 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.54E-12 | 14 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-5 | 15 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.21E-6 | 15 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MEYSGQRTST ISGSSWTAKK NKLFENALAI YDKDTPDRWQ IIAKIVGGTS DEEVKRRYEM 60 LVDDIKSIES DRVPLPDYAQ NDTSNEKRRY LF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-26 | 12 | 88 | 7 | 86 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467147.1 | 6e-60 | protein RADIALIS-like 4 | ||||
Swissprot | F4JVB8 | 1e-27 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | V4SP90 | 3e-61 | V4SP90_9ROSI; Uncharacterized protein | ||||
STRING | XP_006425671.1 | 5e-62 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 6e-30 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10026848m |
Entrez Gene | 18036988 |
Publications ? help Back to Top | |||
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